CuGenDBv2

Gene ID	Sed0017534
Organism	Sechium edule (Chayote v1)
Description	scarecrow-like protein 8
Genome location	LG11:24756237..24756881
RNA-Seq Expression	Sed0017534
Synteny	Sed0017534
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR005202 - Transcription factor GRAS IPR030013 - Scarecrow-like protein 8

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605737.1 Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]

8.8e-35

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

KAG7035643.1 Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.8e-35

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

XP_022958035.1 scarecrow-like protein 8 [Cucurbita moschata]

8.8e-35

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

XP_023524891.1 scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]

1.5e-34

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

XP_023534055.1 scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]

1.5e-34

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AUC8 scarecrow-like protein 8

4.4e-32

68.85

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALK
        SSNS WCETIY+LI P  +P  Q    TS  SS      SSSVAS A+DSWKQSV +AA AISEGKLE +DEIL   VKISNARG+SVQRLAEYMV ALK
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALK

Query:  SRVNPTEFPPPVAEIYGSDSVA
        SRVNP EFPPPV EIYG +  A
Subjt:  SRVNPTEFPPPVAEIYGSDSVA

A0A5A7TML4 Scarecrow-like protein 8

4.4e-32

68.85

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALK
        SSNS WCETIY+LI P  +P  Q    TS  SS      SSSVAS A+DSWKQSV +AA AISEGKLE +DEIL   VKISNARG+SVQRLAEYMV ALK
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALK

Query:  SRVNPTEFPPPVAEIYGSDSVA
        SRVNP EFPPPV EIYG +  A
Subjt:  SRVNPTEFPPPVAEIYGSDSVA

A0A6J1H2B4 scarecrow-like protein 8

4.3e-35

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VKISNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

A0A6J1K574 scarecrow-like protein 8

1.2e-34

71.2

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF
        SS S WCET+Y+LI P A P  QK VSTSPT         S+SSSVAS ++DSWKQSV +AAAAISEGKL+VVDEIL   VK SNARGSSVQRLAEYMVF
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPT---------SSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVF

Query:  ALKSRVNPTEFPPPVAEIYGSDSVA
        ALKSRVNP EFPPPVAEI+G +  A
Subjt:  ALKSRVNPTEFPPPVAEIYGSDSVA

E5GBC7 GRAS family transcription factor

4.4e-32

68.85

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALK
        SSNS WCETIY+LI P  +P  Q    TS  SS      SSSVAS A+DSWKQSV +AA AISEGKLE +DEIL   VKISNARG+SVQRLAEYMV ALK
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSS------SSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALK

Query:  SRVNPTEFPPPVAEIYGSDSVA
        SRVNP EFPPPV EIYG +  A
Subjt:  SRVNPTEFPPPVAEIYGSDSVA

SwissProt top hits

e value

%identity

Alignment

Q9FYR7 Scarecrow-like protein 8

4.7e-07

36.21

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADS---WKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRV
        +SNS W   I +L+ P   P    S S S +SSSSS ++ +  +    +Q+V + A AI+EGK E+  EIL +  +  N   +S ++L ++MV AL+SR+
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADS---WKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRV

Query:  NPTEFPPPVAEIYGSD
               PV E+YG +
Subjt:  NPTEFPPPVAEIYGSD

Arabidopsis top hits

e value

%identity

Alignment

AT5G52510.1 SCARECROW-like 8

3.4e-08

36.21

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Query:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADS---WKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRV
        +SNS W   I +L+ P   P    S S S +SSSSS ++ +  +    +Q+V + A AI+EGK E+  EIL +  +  N   +S ++L ++MV AL+SR+
Subjt:  SSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADS---WKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRV

Query:  NPTEFPPPVAEIYGSD
               PV E+YG +
Subjt:  NPTEFPPPVAEIYGSD

Sequences

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CDS sequence

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ATGGGAGGATGGAAGCGATTCGGTTTCTGTGATTACGAGAGTTCGAATAGTGTTTGGTGTGAGACGATTTATGATCTGATCGGTCCTGCGGCGGCGCCGGAGATTCAGAA
GTCGGTTTCGACTTCGCCGACTTCATCGTCGTCGTCGGTGGCCTCTCTGGCTGCCGATTCGTGGAAGCAATCTGTCACCAAGGCTGCGGCGGCGATTTCGGAAGGGAAAT
TGGAGGTTGTGGATGAGATTCTTGTGCAGGACGTTAAGATTTCGAATGCGAGGGGAAGTTCTGTGCAGAGGTTGGCAGAGTACATGGTTTTCGCGTTGAAATCGCGGGTG
AATCCGACGGAATTTCCGCCGCCGGTGGCGGAGATTTACGGCAGCGACTCAGTCGCTTTACGACGTTTCTCCCTGCTTCAAGCTCGCGTTCATGGTTGGGAAAGTGGGGT
CAATTTAAAATAA

mRNA sequence

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Protein sequence

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MGGWKRFGFCDYESSNSVWCETIYDLIGPAAAPEIQKSVSTSPTSSSSSVASLAADSWKQSVTKAAAAISEGKLEVVDEILVQDVKISNARGSSVQRLAEYMVFALKSRV
NPTEFPPPVAEIYGSDSVALRRFSLLQARVHGWESGVNLK

Sed0017534 (gene) of Chayote v1 genome