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Sed0017590 (gene) of Chayote v1 genome

Gene IDSed0017590
OrganismSechium edule (Chayote v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationLG10:9012560..9014252
RNA-Seq ExpressionSed0017590
SyntenySed0017590
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KZV34405.1 hypothetical protein F511_34028, partial [Dorcoceras hygrometricum]5.7e-1042.24Show/hide
Query:  LQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMTWETCQ-----YELRQDKLETLK-GNLSVNQASVNFVS
        LQ+T KG MKM+EYLT MK   DNLA AG+P+    LI  IL+ LD EY PIV +L + + ++W   Q     YE R ++L T +   +  N AS +F +
Subjt:  LQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMTWETCQ-----YELRQDKLETLK-GNLSVNQASVNFVS

Query:  TNKFKSTPSNSSNTKG
        T+   + P  S+N +G
Subjt:  TNKFKSTPSNSSNTKG

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]1.4e-1142.98Show/hide
Query:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR---NL---EMTWETCQYELRQDKLETLKGNLSVNQA---SVN
        + QQTCKGS++M EYL  MK + DNLA AG  V  + L+S +L  LDEEYNPIV  ++   NL   EM  E   YE R +   +LK  + +NQ    SVN
Subjt:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR---NL---EMTWETCQYELRQDKLETLKGNLSVNQA---SVN

Query:  FVSTNKFKST--PSNSSNTKG
        +V    F++    +N +N+ G
Subjt:  FVSTNKFKST--PSNSSNTKG

XP_038875081.1 uncharacterized protein LOC120067610 [Benincasa hispida]5.7e-1040.3Show/hide
Query:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLEMT-WETCQ-----YELRQDKLETLKGN--------LSVN
        M QQT K ++KM EYLT  K Y DNLAFAG P+    LIS +L+ LDEEYNP+V  +++   T W   Q     YE R +    +K N        +S N
Subjt:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLEMT-WETCQ-----YELRQDKLETLKGN--------LSVN

Query:  QASVNFVS------TNKFKSTPSN--SSNTKGGQ
          SVN V       +N ++++  N  SSN +GG+
Subjt:  QASVNFVS------TNKFKSTPSN--SSNTKGGQ

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]1.3e-0948.61Show/hide
Query:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-NLEMTWETCQYEL
        + QQTCKG+MKM EYL  MK ++DNL   G PV  + L+S +L  LDEE+NP V  ++   E++W   Q EL
Subjt:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-NLEMTWETCQYEL

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]1.7e-0938.71Show/hide
Query:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-NLEMTWETCQYEL--------RQDKLETLKGNLSVNQASVN
        + Q T KG++KM+EYL  MK   DNL  AG P+  +TL+S +L  LDEEYN IV +++  ++M+W   Q EL         Q   +T  G   ++ ASVN
Subjt:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR-NLEMTWETCQYEL--------RQDKLETLKGNLSVNQASVN

Query:  FVST---NKFKSTPSNSSNTKGGQ
          +T   N+   T S++ +  GGQ
Subjt:  FVST---NKFKSTPSNSSNTKGGQ

TrEMBL top hitse value%identityAlignment
A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.4e-0845.05Show/hide
Query:  QTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLE-MTWETCQYEL--RQDKLETL--KGNLSVNQAS
        +T KG +KM+EYLTKMK   D+LA AG  V    L++  LA LD EYNPIV  L + E +TW   Q +L   +++LE +  + NL++N +S
Subjt:  QTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLE-MTWETCQYEL--RQDKLETL--KGNLSVNQAS

A0A2Z6P4D5 Integrase catalytic domain-containing protein1.5e-0840.19Show/hide
Query:  TCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMTWETCQ-----YELRQDKLETLKGNLSVNQASVNFVSTNKF
        T KG MKM+EYL KMK  +D L  AG P+ N  L+   L  LD EYNP+V  L + + ++W   Q     +E R D+     G L++N AS NF +  +F
Subjt:  TCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMTWETCQ-----YELRQDKLETLKGNLSVNQASVNFVSTNKF

Query:  KSTPSNS
        +    NS
Subjt:  KSTPSNS

A0A2Z7BJW9 Uncharacterized protein (Fragment)2.8e-1042.24Show/hide
Query:  LQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMTWETCQ-----YELRQDKLETLK-GNLSVNQASVNFVS
        LQ+T KG MKM+EYLT MK   DNLA AG+P+    LI  IL+ LD EY PIV +L + + ++W   Q     YE R ++L T +   +  N AS +F +
Subjt:  LQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRN-LEMTWETCQ-----YELRQDKLETLK-GNLSVNQASVNFVS

Query:  TNKFKSTPSNSSNTKG
        T+   + P  S+N +G
Subjt:  TNKFKSTPSNSSNTKG

A0A5C7GU53 Uncharacterized protein1.2e-0842Show/hide
Query:  QQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLD-EEYNPIVCILRNLE-MTWETCQ-----YELRQDKLETLKGNLSVNQASVNFVST
        Q+  KG MKM +YL   K   DNLA AG PV  K L+S IL  LD  EYNP+VC +   E ++W   Q     YE R +++     ++++ QA+ NFV T
Subjt:  QQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLD-EEYNPIVCILRNLE-MTWETCQ-----YELRQDKLETLKGNLSVNQASVNFVST

A0A6J1DCW4 uncharacterized protein LOC1110195986.6e-1242.98Show/hide
Query:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR---NL---EMTWETCQYELRQDKLETLKGNLSVNQA---SVN
        + QQTCKGS++M EYL  MK + DNLA AG  V  + L+S +L  LDEEYNPIV  ++   NL   EM  E   YE R +   +LK  + +NQ    SVN
Subjt:  MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILR---NL---EMTWETCQYELRQDKLETLKGNLSVNQA---SVN

Query:  FVSTNKFKST--PSNSSNTKG
        +V    F++    +N +N+ G
Subjt:  FVSTNKFKST--PSNSSNTKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAACAAACTTGCAAAGGATCCATGAAAATGGATGAATATCTGACAAAGATGAAGGGGTACAATGACAACTTGGCTTTTGCTGGACATCCAGTTGACAACAAAAC
TTTAATATCCTACATTTTGGCTAGACTAGATGAAGAATACAATCCAATTGTTTGTATCCTTCGAAATCTAGAAATGACCTGGGAGACTTGTCAATATGAGCTAAGGCAAG
ACAAATTGGAAACACTCAAAGGTAATCTTTCTGTGAACCAAGCATCTGTTAATTTTGTTTCAACTAACAAGTTTAAGTCTACCCCGAGCAACTCTTCAAATACCAAAGGA
GGGCAATGTAGCTAG
mRNA sequenceShow/hide mRNA sequence
TCTGATCTTGGTATCAGAGCACCATGGTTGATCCATCAGTGGAAAAAGATTAAGAGACCTCCCAAAATAAAGCAGCTGAGGAACTGCGCAAAAACACAGATGCTCAACGA
ACGGCTGAAATAGGAAAGGCGATAGTAGTAGAAGTTGATCCACGAGTTATGAGCTCACGAGTAACAGAGGCTGAGAAGGATGGTTGTACAACTCAATGACACCAACATGG
TTGCACAAGTAATGGGCTATGACACTGCTAAGGCTCTTTGGCAAGCAATTGAAAACTGCTATAGGATTTATTCTCGTTCCCAAGAAGACTATAACTGACAAATGTTGCAA
CAAACTTGCAAAGGATCCATGAAAATGGATGAATATCTGACAAAGATGAAGGGGTACAATGACAACTTGGCTTTTGCTGGACATCCAGTTGACAACAAAACTTTAATATC
CTACATTTTGGCTAGACTAGATGAAGAATACAATCCAATTGTTTGTATCCTTCGAAATCTAGAAATGACCTGGGAGACTTGTCAATATGAGCTAAGGCAAGACAAATTGG
AAACACTCAAAGGTAATCTTTCTGTGAACCAAGCATCTGTTAATTTTGTTTCAACTAACAAGTTTAAGTCTACCCCGAGCAACTCTTCAAATACCAAAGGAGGGCAATGT
AGCTAGGGAGGCAAAAACAACTATGGTGGCTCTAAAAATCAGACTTATCAAGCTAGTCCCAAGAATGTTCCACCTCAAGGGTATTCAAATCAGAAGGGGAGAGGGGGCAA
ATGGAGACGACAAGAACGTTATGCTCCCTACACAACAGAAAGGTGTCAAATTTGTAGGAAAATTGGCTATCTAGCATCAATATGCTATTTCCGTTATACTCCTCCAACCA
ACAATCCTCCAAAACAAGCTGCTCAACCTGCTCCCCTTGTCCTTGCTGCTACTACTTTAATGGCTTACCATGAGACTCTGCAAGATGAAGGGTGGTAGTATCTTGATAGT
GGGGCCACACACCATGTTACTGCTGATATGGGACGAATGAATCTTCAAGGTGAATCCCCAGGCCACTCAAACCAAGGAAATCAAGGTCATAGGGAGACTTGAGGAAGGGA
TGTACTGGGTGATTCATTTTAGAGAAGTTGCTGGAAGACTTCCTAAGCCTACAAATGGAGTATATTTTGAAGAAACAGAATTAAGCTTGAAGGAAAGTGTGCCA
Protein sequenceShow/hide protein sequence
MLQQTCKGSMKMDEYLTKMKGYNDNLAFAGHPVDNKTLISYILARLDEEYNPIVCILRNLEMTWETCQYELRQDKLETLKGNLSVNQASVNFVSTNKFKSTPSNSSNTKG
GQCS