CuGenDBv2

Gene ID	Sed0017642
Organism	Sechium edule (Chayote v1)
Description	shootin-1-like
Genome location	LG04:36092089..36098435
RNA-Seq Expression	Sed0017642
Synteny	Sed0017642
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575171.1 hypothetical protein SDJN03_25810, partial [Cucurbita argyrosperma subsp. sororia]

2.7e-70

71.57

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Query:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY
        MEEIKA          APSQP+P LPPLPPKPKKRPLD NA++ ++KMRAVI DLRPHF++VLKTP+FRN KAAN+IRERIKLLQD+Y +M+  TSESLY
Subjt:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY

Query:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV
        IEKTSNVLDGQSL VDNQD+R     HDGKQ  KS          SS+AP+KQ ANDGQ SG YIVGGSAFGWNFIAFTGTEPVYYG+TKE FR+KNPIV
Subjt:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV

Query:  PSES
         SES
Subjt:  PSES

XP_022959506.1 uncharacterized protein LOC111460466 [Cucurbita moschata]

1.0e-69

71.08

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Query:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY
        MEEIKA          APSQP+P LPPLPPKPKKRPLD NA++ ++KMRAVI DLRPHF++VLKTP+FRN KAAN+IRERIKLLQD+Y +M+  TSESLY
Subjt:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY

Query:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV
        IEKTSNVLDGQSL VDNQD+R     HDGKQ  KS          SS+AP+K  ANDGQ SG YIVGGSAFGWNFIAFTGTEPVYYG+TKE FR+KNPIV
Subjt:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV

Query:  PSES
         SES
Subjt:  PSES

XP_023006667.1 uncharacterized protein LOC111499323 [Cucurbita maxima]

5.5e-71

72.06

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Query:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY
        MEEIKA+         APSQP+P LPPLPPKPKKRPLD NA++ ++KMRAVI DLRPHF++VLKTP+FRN KAAN+IRERIKLLQD+Y LM+  TSESLY
Subjt:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY

Query:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV
        IEKTSNVLDGQS+ VDNQD+R     HDGKQ  KS          SS+AP+KQ ANDGQ SG YIVGGSAFGWNFIAFTGTEPVYYG+TKE FREKNPIV
Subjt:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV

Query:  PSES
         SES
Subjt:  PSES

XP_023548253.1 uncharacterized protein LOC111806942 [Cucurbita pepo subsp. pepo]

6.0e-70

72.06

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Query:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY
        MEEIKA          APSQP+P LPPLPPKPKKRPLD NA++ ++KMRAVI DLRPHF++VLKTP+FRN KAAN+IRERIKLLQD+Y LM+  TSESLY
Subjt:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY

Query:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV
        IEKTS VLDGQSL VDNQD+R     HDGKQ  KS          SS+AP+KQ ANDGQ SG YIVGGSAFGWNFIAFTGTEPVYYG+TKE FREKNPIV
Subjt:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV

Query:  PSES
         SES
Subjt:  PSES

XP_038874738.1 uncharacterized protein LOC120067276 [Benincasa hispida]

1.3e-69

71.71

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Query:  MEEIKAAMEAPSQ--------PSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESL
        MEE KA+  AP Q        PS +LPPLPPK KKRPLD NA++ ++KMRAVI DLRPHF++VLKTPDFRN KAAN+IRERIK+LQD+Y LM+  TSE+L
Subjt:  MEEIKAAMEAPSQ--------PSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESL

Query:  YIEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPI
        YIEKTSNVLDGQS  VDNQDRR     HDGK  DKS          SSYA +KQRANDGQ+SG+YIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPI
Subjt:  YIEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPI

Query:  VPSES
        V SES
Subjt:  VPSES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7F0 Uncharacterized protein

1.4e-59

67.01

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Query:  MEEIKAAMEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYIEKT-SN
        MEE KA     + PS +LPPLPPK KKRP D NA++ F+KMR VI DLRPHF++V+KTPDFRN KAA +IRERIK+LQD+YT+M+ ATSE+LYIEKT SN
Subjt:  MEEIKAAMEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYIEKT-SN

Query:  VLDGQSLCVDNQDRRPHDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES
        VLDG +        + HDG   DKS          SS AP+KQRANDGQ+SG+Y+VGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPI  SES
Subjt:  VLDGQSLCVDNQDRRPHDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES

A0A1S3C7F7 uncharacterized protein LOC103497729

4.5e-63

68.39

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Query:  MEEIKAAMEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYIEKTSNV
        MEE KAA+   + PS +LPPLPPK KKRPLD NA++ F+KMRAVI DLRPHF++V+KTPDFRN KAA +IRERIK+LQD+Y  M++ATSE+LYIEKT NV
Subjt:  MEEIKAAMEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYIEKTSNV

Query:  LDGQSLCVDNQDRRPHDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES
        LDG +        + HDGK  DKS          SSYAP+KQRANDG +SG+Y+VGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPI  SES
Subjt:  LDGQSLCVDNQDRRPHDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES

A0A6J1DSC5 uncharacterized protein LOC111023072

1.0e-62

68.84

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Query:  MEEIKAA------MEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYI
        MEEIK A        APS P+  LPPLPPK KKRPLD + F+ +SKMRAVI DLRPHF++VLK PDFRN KAAN+IRERIKLLQD+Y LM+ +T+E+LYI
Subjt:  MEEIKAA------MEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYI

Query:  EKTSNVLDGQSLCVDNQD-RRP----HDGKQEDKSS--SYAP---DKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES
        EKT+N+LDGQSL VDNQD RRP    HD K  DKSS  SY     +KQR NDG  SGAYIVGGSAFGWNFI F G EPVYYG+TKE +REKNPIV SES
Subjt:  EKTSNVLDGQSLCVDNQD-RRP----HDGKQEDKSS--SYAP---DKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES

A0A6J1H517 uncharacterized protein LOC111460466

5.0e-70

71.08

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Query:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY
        MEEIKA          APSQP+P LPPLPPKPKKRPLD NA++ ++KMRAVI DLRPHF++VLKTP+FRN KAAN+IRERIKLLQD+Y +M+  TSESLY
Subjt:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY

Query:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV
        IEKTSNVLDGQSL VDNQD+R     HDGKQ  KS          SS+AP+K  ANDGQ SG YIVGGSAFGWNFIAFTGTEPVYYG+TKE FR+KNPIV
Subjt:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV

Query:  PSES
         SES
Subjt:  PSES

A0A6J1KWG6 uncharacterized protein LOC111499323

2.6e-71

72.06

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Query:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY
        MEEIKA+         APSQP+P LPPLPPKPKKRPLD NA++ ++KMRAVI DLRPHF++VLKTP+FRN KAAN+IRERIKLLQD+Y LM+  TSESLY
Subjt:  MEEIKAAME-------APSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLY

Query:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV
        IEKTSNVLDGQS+ VDNQD+R     HDGKQ  KS          SS+AP+KQ ANDGQ SG YIVGGSAFGWNFIAFTGTEPVYYG+TKE FREKNPIV
Subjt:  IEKTSNVLDGQSLCVDNQDRRP----HDGKQEDKS----------SSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIV

Query:  PSES
         SES
Subjt:  PSES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G01730.1 unknown protein

7.2e-21

34.54

Show/hide

Query:  EEIKAAMEAPSQPS-----PSLPPLPP--KPKKRPLDTNAFL---HFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSES
        ++  A + +P+QP+     PS     P  + +KR L+ N  +   ++ KMR ++ DLRPH ++VL+TPD RN KA  +I+E++KL+  LY  M+  + + 
Subjt:  EEIKAAMEAPSQPS-----PSLPPLPP--KPKKRPLDTNAFL---HFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSES

Query:  LYIEKTSNVLDGQSLCVDNQDRRPHDGKQEDKSSSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAF--TGTEPVYYGITKEVFREKNPIVPSES
            K+ ++ +G++              + +K SS         DG   G  +VGGSAFGWNFI     GTEPVY G++KE +R  +PI+  E+
Subjt:  LYIEKTSNVLDGQSLCVDNQDRRPHDGKQEDKSSSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAF--TGTEPVYYGITKEVFREKNPIVPSES

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAAATCAAAGCAGCCATGGAGGCGCCATCTCAACCCTCTCCCTCATTGCCTCCCCTTCCTCCCAAACCCAAGAAGAGGCCACTTGACACAAATGCTTTTCTCCA
CTTTTCTAAGATGCGTGCTGTTATTTCAGATCTTCGCCCTCATTTTATCCAGGTTTTGAAGACTCCTGACTTTCGCAATGGCAAGGCAGCTAACGATATTCGGGAAAGAA
TAAAGCTTCTACAAGACTTGTATACATTGATGGTCACAGCAACTTCAGAAAGTCTCTACATTGAGAAGACTAGTAACGTGCTCGATGGTCAGTCCTTGTGCGTCGATAAT
CAAGATCGACGACCCCATGATGGTAAGCAGGAGGATAAGTCTTCAAGTTATGCCCCAGATAAGCAGCGGGCAAATGATGGCCAGGTTTCTGGGGCCTATATTGTTGGCGG
ATCGGCATTTGGCTGGAATTTTATCGCCTTTACTGGTACCGAACCGGTTTACTATGGAATTACTAAGGAAGTATTTCGAGAAAAAAATCCCATTGTTCCATCAGAATCAT
GA

mRNA sequence

Show/hide mRNA sequence

CGTCCGATTCAAAACCCCATTCTGCAGAGAGTGGAGAATCAGAATCGGAGGTTTCATCTTTGATGGAGGAAATCAAAGCAGCCATGGAGGCGCCATCTCAACCCTCTCCC
TCATTGCCTCCCCTTCCTCCCAAACCCAAGAAGAGGCCACTTGACACAAATGCTTTTCTCCACTTTTCTAAGATGCGTGCTGTTATTTCAGATCTTCGCCCTCATTTTAT
CCAGGTTTTGAAGACTCCTGACTTTCGCAATGGCAAGGCAGCTAACGATATTCGGGAAAGAATAAAGCTTCTACAAGACTTGTATACATTGATGGTCACAGCAACTTCAG
AAAGTCTCTACATTGAGAAGACTAGTAACGTGCTCGATGGTCAGTCCTTGTGCGTCGATAATCAAGATCGACGACCCCATGATGGTAAGCAGGAGGATAAGTCTTCAAGT
TATGCCCCAGATAAGCAGCGGGCAAATGATGGCCAGGTTTCTGGGGCCTATATTGTTGGCGGATCGGCATTTGGCTGGAATTTTATCGCCTTTACTGGTACCGAACCGGT
TTACTATGGAATTACTAAGGAAGTATTTCGAGAAAAAAATCCCATTGTTCCATCAGAATCATGATTTGGAACACTCAGTAAAGATTATGTAGGGGGGAAATCTTCTTTTG
TTAACATGACTTTGGAAGACTGTTGAATTAGCTTCTTTTATTTAGAGTGTGAATGTAGAGTGTAGATGTTCAAGTTTAACATCTGGAAATGGTGGGTTTTTGTTGGTCTA
AATTATAGTTTTACAAGTATCCATTAAGTTGCCCTTTATGATATTC

Protein sequence

Show/hide protein sequence

MEEIKAAMEAPSQPSPSLPPLPPKPKKRPLDTNAFLHFSKMRAVISDLRPHFIQVLKTPDFRNGKAANDIRERIKLLQDLYTLMVTATSESLYIEKTSNVLDGQSLCVDN
QDRRPHDGKQEDKSSSYAPDKQRANDGQVSGAYIVGGSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVPSES

Sed0017642 (gene) of Chayote v1 genome