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Sed0017646 (gene) of Chayote v1 genome

Gene IDSed0017646
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome locationLG13:6413891..6420271
RNA-Seq ExpressionSed0017646
SyntenySed0017646
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452025.1 PREDICTED: uncharacterized protein LOC103493156 [Cucumis melo]5.2e-5477.99Show/hide
Query:  MEQTQA-GFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAA
        MEQ+ A      IETE QIPATSPNST       S+  EDCTK++ SLSQTQI EAIEVVEKDSLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAA
Subjt:  MEQTQA-GFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAA

Query:  GLLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
        G LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLKVLR+NVD LD+AVNKLLNFP
Subjt:  GLLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
XP_022136588.1 uncharacterized protein LOC111008257 isoform X2 [Momordica charantia]4.7e-5577.85Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        M+Q +A F   I  ++QIP TSPNSTV EM  CS + ED TKSKP L QT+IF+AIEVVEKDSLAIAESFTSLF+SLR ALS+ + NSIDHMHCFSDAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKGIDNLA+QLKVLR+NVD LD AVNKLL+FP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]3.6e-5574.68Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        MEQ+ +   + IE   QIPATSPNS +PE   CS + EDCT+ + SLS T+IF+AI+VVEKDSLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLK+LR+NVD LD+AVNKLLNFP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]8.1e-5574.05Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        MEQ+ +   + IE  +QIPATSPNS +PE   CS + EDCT+ + SLS T+IF+AI+VVEK+SLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLK+LR+NVD LD+AVNKLLNFP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]6.2e-5574.68Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        MEQ+ +     IE   QIPATSPNS +PE   CS + EDCT+ + SLS T+IF+AI+VVEKDSLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLK+LR+NVD LD+AVNKLLNFP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
TrEMBL top hitse value%identityAlignment
A0A0A0KWT2 Uncharacterized protein1.3e-5376.1Show/hide
Query:  MEQTQA-GFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAA
        MEQ+ A      IETE QIPATSPNST       S++ EDCTK++ SLSQ QI +AIEVVEKDSLA+AESFTSLF+SLR  LS+VT+NSIDHMHCF+DAA
Subjt:  MEQTQA-GFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAA

Query:  GLLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
        G LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLKVLR+NVD LD+AVNKLLNFP
Subjt:  GLLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
A0A1S3BTP0 uncharacterized protein LOC1034931562.5e-5477.99Show/hide
Query:  MEQTQA-GFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAA
        MEQ+ A      IETE QIPATSPNST       S+  EDCTK++ SLSQTQI EAIEVVEKDSLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAA
Subjt:  MEQTQA-GFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAA

Query:  GLLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
        G LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLKVLR+NVD LD+AVNKLLNFP
Subjt:  GLLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X22.3e-5577.85Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        M+Q +A F   I  ++QIP TSPNSTV EM  CS + ED TKSKP L QT+IF+AIEVVEKDSLAIAESFTSLF+SLR ALS+ + NSIDHMHCFSDAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKGIDNLA+QLKVLR+NVD LD AVNKLL+FP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
A0A6J1EUG1 uncharacterized protein LOC1114376681.8e-5574.68Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        MEQ+ +   + IE   QIPATSPNS +PE   CS + EDCT+ + SLS T+IF+AI+VVEKDSLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLK+LR+NVD LD+AVNKLLNFP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
A0A6J1J2E9 uncharacterized protein LOC1114827983.9e-5574.05Show/hide
Query:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG
        MEQ+ +   + IE  +QIPATSPNS +PE   CS + EDCT+ + SLS T+IF+AI+VVEK+SLAIAESFTSLF+SLR  LS+VT+NSIDHMHCF+DAAG
Subjt:  MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAG

Query:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
         LQESVLDAATKGNRYINSSLRLNQEMKG+DNLA+QLK+LR+NVD LD+AVNKLLNFP
Subjt:  LLQESVLDAATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)3.7e-2151.75Show/hide
Query:  AIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAGLLQESVLDA
        A I+    + A S     PE       D +      SL+Q +I + +  VEKDS AIAESF+SLF SLR  LS+ T +S+DHM CF +AAG LQE+ LDA
Subjt:  AIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAGLLQESVLDA

Query:  ATKGNRYINSSLRL
        ATKGNRYINS LRL
Subjt:  ATKGNRYINSSLRL
AT4G23330.2 unknown protein1.3e-3455.03Show/hide
Query:  AIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAGLLQESVLDA
        A I+    + A S     PE       D +      SL+Q +I + +  VEKDS AIAESF+SLF SLR  LS+ T +S+DHM CF +AAG LQE+ LDA
Subjt:  AIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAGLLQESVLDA

Query:  ATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP
        ATKGNRYINS LRLN+E+KG++NLA++LK LR+NVD LD AVNKLL  P
Subjt:  ATKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAAACTCAGGCGGGTTTTCCGGCGATCATCGAAACTGAAACTCAGATTCCGGCCACATCCCCAAATTCAACCGTTCCCGAGATGTCGGCTTGTTCCGCCATTGA
TGAAGATTGTACCAAATCCAAACCTTCGTTGAGCCAGACCCAGATTTTCGAAGCCATTGAAGTCGTCGAGAAGGACTCTCTCGCCATTGCTGAGAGCTTCACCTCTCTCT
TTTCTTCCCTCCGTTTGGCTCTCTCTCAGGTTACCAACAACTCTATTGATCATATGCATTGTTTCAGCGATGCTGCAGGCCTCCTTCAAGAATCTGTGCTTGATGCGGCA
ACTAAGGGTAACAGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATTGACAACCTAGCTTCACAGCTAAAGGTTTTGAGGAGGAACGTGGATACTCT
AGACATGGCTGTGAACAAGCTCCTTAATTTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATCTGATTGAGGGATTTGATCTTGAACAAATTAGTAAAGAAACTGATATTTTCTTAGTTGAATCGAGACTTGCTTCTTGATAATCCATCAATAGTGAAAATTGAGCTTTC
GTGGTTGTGTTGAATTTCAATGGCCCCATCCTAATGCCACAGAATTCGAAATCCAATTTCCGAAAACAATCAGCGTCGTATTAGGTTAACAAAAACATCGGAAAATGGAG
CAAACTCAGGCGGGTTTTCCGGCGATCATCGAAACTGAAACTCAGATTCCGGCCACATCCCCAAATTCAACCGTTCCCGAGATGTCGGCTTGTTCCGCCATTGATGAAGA
TTGTACCAAATCCAAACCTTCGTTGAGCCAGACCCAGATTTTCGAAGCCATTGAAGTCGTCGAGAAGGACTCTCTCGCCATTGCTGAGAGCTTCACCTCTCTCTTTTCTT
CCCTCCGTTTGGCTCTCTCTCAGGTTACCAACAACTCTATTGATCATATGCATTGTTTCAGCGATGCTGCAGGCCTCCTTCAAGAATCTGTGCTTGATGCGGCAACTAAG
GGTAACAGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATTGACAACCTAGCTTCACAGCTAAAGGTTTTGAGGAGGAACGTGGATACTCTAGACAT
GGCTGTGAACAAGCTCCTTAATTTTCCATGAACTCGGCTCGGCTCGACCCGGTCTGGTCCCAGTTCTTGCAAGGCTTGATCGTTTGATGATAATACTGGTAGGAGGGGGA
GGTTATTCAGCTTCTCAGAGATGCCCTTATAATAATGGAGGTTTAAAGTTAAAAAGATCACAAATTTAGGTATAAACCTTTGAATGTGTGGCTAAAAGGTTCTTGTTATA
TTCAATTTTTAAAATGAAACAGTTTGTTAGATATTTATGACCCAAGCTTTCAATTTAGTGTTAAATGGATTTGTGAATTATAAAAGAAAAGAAGTTAAATAGGTCTTTAC
AATGTAAAGTAGGTCAAATACAATTTATGGATTTATTGTATATAAATGTGTAAGATCAAATATCTATCAACACTTATTAAAATGTAGAGACTTGTTAAATGGACAATTGT
AATGGAAGAGTGTGATACTGTAGCCAACTCC
Protein sequenceShow/hide protein sequence
MEQTQAGFPAIIETETQIPATSPNSTVPEMSACSAIDEDCTKSKPSLSQTQIFEAIEVVEKDSLAIAESFTSLFSSLRLALSQVTNNSIDHMHCFSDAAGLLQESVLDAA
TKGNRYINSSLRLNQEMKGIDNLASQLKVLRRNVDTLDMAVNKLLNFP