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Sed0017650 (gene) of Chayote v1 genome

Gene IDSed0017650
OrganismSechium edule (Chayote v1)
DescriptionAlanine--tRNA ligase
Genome locationLG05:25054771..25055618
RNA-Seq ExpressionSed0017650
SyntenySed0017650
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:0070143 - mitochondrial alanyl-tRNA aminoacylation (biological process)
GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
GO:0004813 - alanine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016597 - amino acid binding (molecular function)
InterPro domainsIPR018162 - Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily
IPR018164 - Alanyl-tRNA synthetase, class IIc, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606909.1 Alanine--tRNA ligase, partial [Cucurbita argyrosperma subsp. sororia]3.3e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

KAG7018049.1 Alanine--tRNA ligase, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-2063.74Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKFSQANHNCDVSNYPPLPASGGGVEVLSSSDVSSPLHR
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F       D   +P       G  ++  +D ++ LH+
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKFSQANHNCDVSNYPPLPASGGGVEVLSSSDVSSPLHR

XP_004148575.2 alanine--tRNA ligase [Cucumis sativus]3.3e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

XP_022983493.1 alanine--tRNA ligase-like [Cucurbita maxima]3.3e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

XP_023527072.1 alanine--tRNA ligase-like [Cucurbita pepo subsp. pepo]3.3e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

TrEMBL top hitse value%identityAlignment
A0A0A0LEP6 Alanine--tRNA ligase1.6e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

A0A6J1F2W2 Alanine--tRNA ligase1.6e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

A0A6J1GBS5 Alanine--tRNA ligase1.6e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

A0A6J1J7W9 Alanine--tRNA ligase1.6e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

A0A6J1K7W5 Alanine--tRNA ligase1.6e-1994.55Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+FPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

SwissProt top hitse value%identityAlignment
A5FSU1 Alanine--tRNA ligase8.1e-0540Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        M  I+PELK+ +  + E+IA EEA F +TL  G+E  ++  +  +G  +SGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

A6H0Y3 Alanine--tRNA ligase4.7e-0540Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MG+ FPE+K  +  +  +I EEEASF +TL +G++   K   + +GK +SG   F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

A6VA71 Alanine--tRNA ligase8.1e-0538.18Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD FPELKQ +  I  ++  EE  F KTL +G++  ++   ++QG ++ G   F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

P36428 Alanine--tRNA ligase4.7e-1367.27Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+F ELK+HE +I +II EEEASF KTL KGIEKF+KA Q VQG  LSG + F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

Q3ZWC3 Alanine--tRNA ligase8.1e-0540Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        M  I+PELK+ +  + E+IA EEA F +TL  G+E  ++  +  +G  +SGQ+ F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

Arabidopsis top hitse value%identityAlignment
AT1G50200.1 Alanyl-tRNA synthetase3.4e-1467.27Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+F ELK+HE +I +II EEEASF KTL KGIEKF+KA Q VQG  LSG + F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF

AT1G50200.2 Alanyl-tRNA synthetase3.4e-1467.27Show/hide
Query:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF
        MGD+F ELK+HE +I +II EEEASF KTL KGIEKF+KA Q VQG  LSG + F
Subjt:  MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGATATCTTCCCAGAGCTAAAACAACACGAAGTTCGGATTAGGGAGATAATTGCAGAAGAGGAAGCAAGTTTTGGGAAAACTTTGCTGAAGGGAATTGAGAAATT
TAAGAAGGCGGCTCAGGATGTACAAGGGAAGATATTGAGTGGGCAGAACAAATTCTCTCAAGCGAACCATAATTGCGACGTGTCAAACTATCCTCCTCTTCCGGCATCAG
GGGGAGGGGTAGAGGTACTTTCCTCCAGCGACGTGTCCTCCCCTCTTCACCGGTGCCAACTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGATATCTTCCCAGAGCTAAAACAACACGAAGTTCGGATTAGGGAGATAATTGCAGAAGAGGAAGCAAGTTTTGGGAAAACTTTGCTGAAGGGAATTGAGAAATT
TAAGAAGGCGGCTCAGGATGTACAAGGGAAGATATTGAGTGGGCAGAACAAATTCTCTCAAGCGAACCATAATTGCGACGTGTCAAACTATCCTCCTCTTCCGGCATCAG
GGGGAGGGGTAGAGGTACTTTCCTCCAGCGACGTGTCCTCCCCTCTTCACCGGTGCCAACTCTGA
Protein sequenceShow/hide protein sequence
MGDIFPELKQHEVRIREIIAEEEASFGKTLLKGIEKFKKAAQDVQGKILSGQNKFSQANHNCDVSNYPPLPASGGGVEVLSSSDVSSPLHRCQL