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Sed0017670 (gene) of Chayote v1 genome

Gene IDSed0017670
OrganismSechium edule (Chayote v1)
Descriptionprotein TAPETUM DETERMINANT 1-like
Genome locationLG04:41946292..41947719
RNA-Seq ExpressionSed0017670
SyntenySed0017670
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO58452.1 hypothetical protein COLO4_34617 [Corchorus olitorius]1.3e-4565.81Show/hide
Query:  LLIILFCNFDIHLH--KDSVVSSSSCDRSPILAGN--LEHKQPRYSPRKLLVHER--CSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCG
        +LII FC+ ++H    K+ VVS+S  D    + GN  +  KQ   S RKLLVH R  CSNRDISISQSK+STSGIP++IVQI NTC+S C  S+I +HCG
Subjt:  LLIILFCNFDIHLH--KDSVVSSSSCDRSPILAGN--LEHKQPRYSPRKLLVHER--CSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCG

Query:  WFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        WFASA+IVNPR FKRV YDDCLVN GK LK +QTIRFTYSNSFMYPL FKSA FC
Subjt:  WFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

XP_010649517.1 PREDICTED: TPD1 protein homolog 1 [Vitis vinifera]2.4e-4460.38Show/hide
Query:  LFFFFFSFLLIILFCNFDIHLHKDSVV--SSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIR
        +FFF    L+II+ C+  +HL   S+   S    D     A  ++  Q   + RKLL+H  C+NRDISISQS++S+SGIP++IVQI NTC+S CA S+I 
Subjt:  LFFFFFSFLLIILFCNFDIHLHKDSVV--SSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIR

Query:  VHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        +HCGWFASA+IVNPRIFKR+FYDDCLVN GKPLK +Q IRFTYSNSFMYPL FKSA FC
Subjt:  VHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

XP_022138822.1 protein TAPETUM DETERMINANT 1-like [Momordica charantia]3.1e-4484.31Show/hide
Query:  VHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSAN
        +H RCSNRDISISQSK+ST+GIP++IVQI NTCLS+CA SEIR+HCGWFASAKIVNPRIFKR+FYDDCLVN GKPL I++TIRFTYSNSFMYPLRFKSA 
Subjt:  VHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSAN

Query:  FC
        FC
Subjt:  FC

XP_022760925.1 protein TAPETUM DETERMINANT 1-like [Durio zibethinus]2.4e-4459.49Show/hide
Query:  LFFFFFSFLLIILFCNFDIHLHKDSVVSSSSC-DRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRV
        +++ F   +LII+FC+ ++H      +  S+C D   +   N+  +Q   S RKLLVH  C+NRDISISQSK+STSGIP+FIVQI NTC+S C  S+I +
Subjt:  LFFFFFSFLLIILFCNFDIHLHKDSVVSSSSC-DRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRV

Query:  HCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        HCGWFASA+IVNP  FKRV YDDCLVN GK L  +Q IRFTYSNSFMYPL FKSA FC
Subjt:  HCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

XP_038876241.1 protein TAPETUM DETERMINANT 1-like [Benincasa hispida]4.3e-5465.73Show/hide
Query:  MNSSAHFAHCLLLFFFFFSFLLIILFCNFDIHLHKDSVVSSSSCDRSP--------ILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEF
        MN S+HF  C   FFFFFS  L+I+F NFD H   +  ++SS  +  P        ILA  LE ++     RKL +HERCSN+DISISQSK+STSGIPEF
Subjt:  MNSSAHFAHCLLLFFFFFSFLLIILFCNFDIHLHKDSVVSSSSCDRSP--------ILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEF

Query:  IVQITNTCLS-DCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        IVQI NTCLS +CA S+I +HCGWFASAK+VNP IFKR+FYDDCLVN GKPLKI+QTIRFTYSNSFMYPL FKSANFC
Subjt:  IVQITNTCLS-DCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

TrEMBL top hitse value%identityAlignment
A0A061EWV7 Uncharacterized protein1.8e-4259.62Show/hide
Query:  FFFFSFLLIILFCNFDIHLHKDSVVSSSSC-DRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHC
        + F   +L+ILFC+ ++H        +S+C D   +   N   +Q   S RKLLV   C++RDISISQSK+STSGIP++IVQI NTC+S CA S+I +HC
Subjt:  FFFFSFLLIILFCNFDIHLHKDSVVSSSSC-DRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHC

Query:  GWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        GWFASA+IV PR FKRV YDDCLVN GKPLK  Q IRFTYSNSFMYPL  KSA FC
Subjt:  GWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

A0A1R3GK42 Uncharacterized protein6.1e-4665.81Show/hide
Query:  LLIILFCNFDIHLH--KDSVVSSSSCDRSPILAGN--LEHKQPRYSPRKLLVHER--CSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCG
        +LII FC+ ++H    K+ VVS+S  D    + GN  +  KQ   S RKLLVH R  CSNRDISISQSK+STSGIP++IVQI NTC+S C  S+I +HCG
Subjt:  LLIILFCNFDIHLH--KDSVVSSSSCDRSPILAGN--LEHKQPRYSPRKLLVHER--CSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCG

Query:  WFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        WFASA+IVNPR FKRV YDDCLVN GK LK +QTIRFTYSNSFMYPL FKSA FC
Subjt:  WFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

A0A438GAZ0 TPD1 protein-like 11.1e-4460.38Show/hide
Query:  LFFFFFSFLLIILFCNFDIHLHKDSVV--SSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIR
        +FFF    L+II+ C+  +HL   S+   S    D     A  ++  Q   + RKLL+H  C+NRDISISQS++S+SGIP++IVQI NTC+S CA S+I 
Subjt:  LFFFFFSFLLIILFCNFDIHLHKDSVV--SSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIR

Query:  VHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        +HCGWFASA+IVNPRIFKR+FYDDCLVN GKPLK +Q IRFTYSNSFMYPL FKSA FC
Subjt:  VHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

A0A6J1CCA7 protein TAPETUM DETERMINANT 1-like1.5e-4484.31Show/hide
Query:  VHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSAN
        +H RCSNRDISISQSK+ST+GIP++IVQI NTCLS+CA SEIR+HCGWFASAKIVNPRIFKR+FYDDCLVN GKPL I++TIRFTYSNSFMYPLRFKSA 
Subjt:  VHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSAN

Query:  FC
        FC
Subjt:  FC

A0A6P6A808 protein TAPETUM DETERMINANT 1-like1.1e-4459.49Show/hide
Query:  LFFFFFSFLLIILFCNFDIHLHKDSVVSSSSC-DRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRV
        +++ F   +LII+FC+ ++H      +  S+C D   +   N+  +Q   S RKLLVH  C+NRDISISQSK+STSGIP+FIVQI NTC+S C  S+I +
Subjt:  LFFFFFSFLLIILFCNFDIHLHKDSVVSSSSC-DRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIRV

Query:  HCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC
        HCGWFASA+IVNP  FKRV YDDCLVN GK L  +Q IRFTYSNSFMYPL FKSA FC
Subjt:  HCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058359.4e-0435.8Show/hide
Query:  EFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYD---DCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANF
        +F V++ N C   C +  +R+ C  F  + +V+P  F RV      +C+VN G PL   QT+ F YSN+  + LR  S +F
Subjt:  EFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYD---DCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANF

Q1G3T1 TPD1 protein homolog 12.8e-2448.04Show/hide
Query:  VHERCSNRDISISQSKES--TSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKS
        + + CS  DI + Q   +   SG+P + V+I N+C+SDC ++EI V CGWF+S ++VNPR+F+R+ YDDCLVN G+PL   Q++ F Y+NSF YPL   S
Subjt:  VHERCSNRDISISQSKES--TSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKS

Query:  AN
         +
Subjt:  AN

Q2QR54 TPD1 protein homolog 1A1.5e-1742.55Show/hide
Query:  DISISQSKES--TSGIPEFIVQITNTCL------SDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL
        DI+I Q + +   SG+P + V + N C        +CA++ I V CGWF+S  +V+PR+F+R+ +DDCL+N G+PL   +T+ F Y+NSF Y L
Subjt:  DISISQSKES--TSGIPEFIVQITNTCL------SDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL

Q6TLJ2 Protein TAPETUM DETERMINANT 11.1e-2542.54Show/hide
Query:  DIHLHKDSVVSSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQ--SKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIF
        ++ L K +  S S   R  +L      K  R S     + E+C + DI ++Q  ++   +GIP ++V+ITN C+S C +S I ++CGWF+SAK++NPR+F
Subjt:  DIHLHKDSVVSSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQ--SKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIF

Query:  KRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL
        KR+ YDDCLVN GKPL    T+ F Y+N+F Y L
Subjt:  KRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL

Q8S6P9 TPD1 protein homolog 1B4.5e-1439.36Show/hide
Query:  ERCSNRDISISQ--SKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL
        + CS +++ + Q  ++   SGIP + V+I N C + C + ++ + CG FASA++V+P  F+R+ ++DCLV  G  L  ++ + F YSNSF YPL
Subjt:  ERCSNRDISISQ--SKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein6.7e-0535.8Show/hide
Query:  EFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYD---DCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANF
        +F V++ N C   C +  +R+ C  F  + +V+P  F RV      +C+VN G PL   QT+ F YSN+  + LR  S +F
Subjt:  EFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYD---DCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANF

AT1G32583.1 FUNCTIONS IN: molecular_function unknown2.0e-2548.04Show/hide
Query:  VHERCSNRDISISQSKES--TSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKS
        + + CS  DI + Q   +   SG+P + V+I N+C+SDC ++EI V CGWF+S ++VNPR+F+R+ YDDCLVN G+PL   Q++ F Y+NSF YPL   S
Subjt:  VHERCSNRDISISQSKES--TSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKS

Query:  AN
         +
Subjt:  AN

AT4G24972.1 tapetum determinant 18.1e-2742.54Show/hide
Query:  DIHLHKDSVVSSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQ--SKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIF
        ++ L K +  S S   R  +L      K  R S     + E+C + DI ++Q  ++   +GIP ++V+ITN C+S C +S I ++CGWF+SAK++NPR+F
Subjt:  DIHLHKDSVVSSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQ--SKESTSGIPEFIVQITNTCLSDCALSEIRVHCGWFASAKIVNPRIF

Query:  KRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL
        KR+ YDDCLVN GKPL    T+ F Y+N+F Y L
Subjt:  KRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCTCTGCACATTTTGCTCATTGCCTCCTCCTTTTTTTCTTCTTCTTCTCCTTTCTTTTGATCATCCTATTTTGCAATTTTGATATTCACTTACATAAAGATTC
AGTAGTCTCTTCCTCAAGCTGCGATCGGAGTCCGATTCTTGCTGGAAATTTAGAGCACAAGCAACCGCGTTACAGCCCGAGAAAGCTTTTGGTGCACGAAAGATGCAGCA
ATAGAGATATAAGCATTTCACAAAGCAAAGAATCAACATCAGGAATTCCAGAGTTCATAGTTCAAATTACAAACACTTGTCTCTCCGATTGCGCCCTATCGGAAATTCGT
GTGCATTGCGGCTGGTTCGCCTCTGCAAAAATTGTAAACCCTAGAATTTTCAAGAGGGTTTTTTATGACGATTGCTTGGTTAACCAAGGAAAGCCATTGAAGATCGCTCA
AACTATCAGATTCACTTACTCTAATTCCTTTATGTACCCTCTCCGATTCAAATCCGCTAACTTTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATTTCATTCTTTCATAATTGCTCTCTCTTTTTCCATTTTAATAGAAAAAAAAAATTGTCATGAATAGCTCTGCACATTTTGCTCATTGCCTCCTCCTTTTTTTCTTCTTC
TTCTCCTTTCTTTTGATCATCCTATTTTGCAATTTTGATATTCACTTACATAAAGATTCAGTAGTCTCTTCCTCAAGCTGCGATCGGAGTCCGATTCTTGCTGGAAATTT
AGAGCACAAGCAACCGCGTTACAGCCCGAGAAAGCTTTTGGTGCACGAAAGATGCAGCAATAGAGATATAAGCATTTCACAAAGCAAAGAATCAACATCAGGAATTCCAG
AGTTCATAGTTCAAATTACAAACACTTGTCTCTCCGATTGCGCCCTATCGGAAATTCGTGTGCATTGCGGCTGGTTCGCCTCTGCAAAAATTGTAAACCCTAGAATTTTC
AAGAGGGTTTTTTATGACGATTGCTTGGTTAACCAAGGAAAGCCATTGAAGATCGCTCAAACTATCAGATTCACTTACTCTAATTCCTTTATGTACCCTCTCCGATTCAA
ATCCGCTAACTTTTGTTGACCTTCCATAACTCAGAC
Protein sequenceShow/hide protein sequence
MNSSAHFAHCLLLFFFFFSFLLIILFCNFDIHLHKDSVVSSSSCDRSPILAGNLEHKQPRYSPRKLLVHERCSNRDISISQSKESTSGIPEFIVQITNTCLSDCALSEIR
VHCGWFASAKIVNPRIFKRVFYDDCLVNQGKPLKIAQTIRFTYSNSFMYPLRFKSANFC