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Sed0017710 (gene) of Chayote v1 genome

Gene IDSed0017710
OrganismSechium edule (Chayote v1)
DescriptionDUF4413 domain-containing protein
Genome locationLG10:33714113..33716700
RNA-Seq ExpressionSed0017710
SyntenySed0017710
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0043039 - tRNA aminoacylation (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0016874 - ligase activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025525 - hAT-like transposase, RNase-H fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN44253.1 hypothetical protein Csa_016011 [Cucumis sativus]5.1e-2451.77Show/hide
Query:  KFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKS-SSITEE--DISCSSKEVDSSSPRLSPKKDRFLKFDEFFY
        +++KYWSVIHGVLAIATVLDPRFK+RL EFYF QIYGSH  VE++RV++LC +L+  Y S SSI EE    S S+ + D SS + S              
Subjt:  KFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKS-SSITEE--DISCSSKEVDSSSPRLSPKKDRFLKFDEFFY

Query:  FVFVFKSTPIDAKVLETILHDQDSDDEDQNLTFESSGTKLD
             K TP+DAKVLE + HDQD DD+      E   TKLD
Subjt:  FVFVFKSTPIDAKVLETILHDQDSDDEDQNLTFESSGTKLD

TYK23151.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. makuwa]1.2e-2052.83Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEED--------ISCSSKEVDSSSPRLSPKKDRF
        MI KF+KYWSVIH  LAIAT LDP+FK+RL EFYFPQIY SH   E++RV++LC +L+ +Y S S T E+         S S ++  SS   L  +KDR 
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEED--------ISCSSKEVDSSSPRLSPKKDRF

Query:  LKFDEF
        LKF++F
Subjt:  LKFDEF

XP_023738785.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Lactuca sativa]1.6e-1454.55Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDISCSSKE
        MI+KF +YWS IHGVLAIAT+LDPRFK++L E+YFP+IYG  S  EV+R++ L  EL+  YK     E   S ++ E
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDISCSSKE

XP_023927800.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Quercus suber]2.1e-1455.07Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEE
        M++KF  YW+VIHGV+A+AT+LDPR+KI L E+YFP IYG  +  E+QRV+D+C E+I  Y S  +  E
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEE

XP_038884881.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]2.0e-2071.43Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEED
        MI KF+KYWSVIHGVLAIATVLDPRFK+RL +FYFPQIYG H TVE++RV+DLC +L+ +Y S+S T E+
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEED

TrEMBL top hitse value%identityAlignment
A0A0A0K403 DUF4413 domain-containing protein2.5e-2451.77Show/hide
Query:  KFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKS-SSITEE--DISCSSKEVDSSSPRLSPKKDRFLKFDEFFY
        +++KYWSVIHGVLAIATVLDPRFK+RL EFYF QIYGSH  VE++RV++LC +L+  Y S SSI EE    S S+ + D SS + S              
Subjt:  KFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKS-SSITEE--DISCSSKEVDSSSPRLSPKKDRFLKFDEFFY

Query:  FVFVFKSTPIDAKVLETILHDQDSDDEDQNLTFESSGTKLD
             K TP+DAKVLE + HDQD DD+      E   TKLD
Subjt:  FVFVFKSTPIDAKVLETILHDQDSDDEDQNLTFESSGTKLD

A0A2N9EE68 Uncharacterized protein4.6e-1536.43Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDI--SCSSKEVDSSSPRLSPKKDRFLKFDEF
        M++KF  YW+VIH ++A+AT+LDPR+KI L E+YFP IYG  +  E+QR++D+C E++  Y S  + +E    +C+S++V +         D  + FD F
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDI--SCSSKEVDSSSPRLSPKKDRFLKFDEF

Query:  F-YFVFVFKSTPIDAKVLETILHDQDSDDEDQNLTFESSG
                 ST  +   ++ IL D D +DE     +E  G
Subjt:  F-YFVFVFKSTPIDAKVLETILHDQDSDDEDQNLTFESSG

A0A2N9EIN6 Uncharacterized protein6.1e-1543Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDI--SCSSKEVDSSSPRLSPKKDRFLKFDEF
        M++KF  YW+VIHGV+A+AT+LDPR+KI L E+YFP IYG  +  E+QR++D+C E++  Y S  + +E    +C+S++V +         D  + FD F
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDI--SCSSKEVDSSSPRLSPKKDRFLKFDEF

A0A2N9I292 Uncharacterized protein4.6e-1548.75Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDI--SCSSKEV
        M++KF  YW+VIHGV+A+AT+LDPR+KI L E+YFP IYG  +  E+QR++D+C E++  Y S  + +E    +C+S++V
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDI--SCSSKEV

A0A5D3DHK7 Zinc finger BED domain-containing protein DAYSLEEPER-like5.7e-2152.83Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEED--------ISCSSKEVDSSSPRLSPKKDRF
        MI KF+KYWSVIH  LAIAT LDP+FK+RL EFYFPQIY SH   E++RV++LC +L+ +Y S S T E+         S S ++  SS   L  +KDR 
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEED--------ISCSSKEVDSSSPRLSPKKDRF

Query:  LKFDEF
        LKF++F
Subjt:  LKFDEF

SwissProt top hitse value%identityAlignment
B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 11.8e-0847.54Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY
        M ++F KYW   + VLAIA V+DPRFK++L EF + +IYG  +   V+ V D   EL N Y
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY

P08770 Putative AC transposase1.7e-0640Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSS
        M +KF+KYW V +  LA+A  LDPR+K  L EFY  + +G    V V     + ++L  +Y S S
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSS

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 29.0e-0845.9Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY
        M ++F KYW   + VLAIA V+DPRFK++L EF + +IYG  +   V+ V D   EL   Y
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 34.1e-0835.42Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDISCSSKEVDSSSPRLSPKKDRFLKFD
        M ++F KYW   + VLAIA V+DPRFK++L EF + +I+   +   V+ V D   EL + Y     T+ + +  +   D+S+    P  D  L FD
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDISCSSKEVDSSSPRLSPKKDRFLKFD

Q9M2N5 Zinc finger BED domain-containing protein DAYSLEEPER1.7e-0642.62Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY
        M +K  KYW     VLA+A V+DPRFK++L EF F +I+G  +   ++ V D   EL   Y
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain1.2e-0742.62Show/hide
Query:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY
        M +K  KYW     VLA+A V+DPRFK++L EF F +I+G  +   ++ V D   EL   Y
Subjt:  MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGATAAGTTCAAAAAATATTGGAGCGTGATTCATGGTGTATTGGCAATAGCAACAGTTTTAGATCCTAGGTTTAAGATAAGATTGACTGAATTTTATTTCCCTCA
AATCTATGGATCTCATTCTACTGTTGAAGTGCAACGTGTTAAAGATCTGTGCAAAGAATTGATTAATTATTATAAGTCAAGTTCAATTACAGAGGAAGACATTTCATGTT
CTTCAAAGGAGGTGGATAGTTCTAGTCCTAGACTTAGTCCGAAGAAAGATCGATTTCTTAAGTTTGATGAGTTTTTTTATTTTGTATTTGTATTCAAATCTACTCCCATA
GATGCCAAAGTGTTGGAGACTATTCTCCATGATCAAGATTCCGATGATGAGGACCAAAATTTAACTTTTGAAAGTTCAGGGACCAAATTAGACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGATAAGTTCAAAAAATATTGGAGCGTGATTCATGGTGTATTGGCAATAGCAACAGTTTTAGATCCTAGGTTTAAGATAAGATTGACTGAATTTTATTTCCCTCA
AATCTATGGATCTCATTCTACTGTTGAAGTGCAACGTGTTAAAGATCTGTGCAAAGAATTGATTAATTATTATAAGTCAAGTTCAATTACAGAGGAAGACATTTCATGTT
CTTCAAAGGAGGTGGATAGTTCTAGTCCTAGACTTAGTCCGAAGAAAGATCGATTTCTTAAGTTTGATGAGTTTTTTTATTTTGTATTTGTATTCAAATCTACTCCCATA
GATGCCAAAGTGTTGGAGACTATTCTCCATGATCAAGATTCCGATGATGAGGACCAAAATTTAACTTTTGAAAGTTCAGGGACCAAATTAGACTTTTGA
Protein sequenceShow/hide protein sequence
MIDKFKKYWSVIHGVLAIATVLDPRFKIRLTEFYFPQIYGSHSTVEVQRVKDLCKELINYYKSSSITEEDISCSSKEVDSSSPRLSPKKDRFLKFDEFFYFVFVFKSTPI
DAKVLETILHDQDSDDEDQNLTFESSGTKLDF