; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017721 (gene) of Chayote v1 genome

Gene IDSed0017721
OrganismSechium edule (Chayote v1)
DescriptionLSD1 zinc finger family protein
Genome locationLG01:69806789..69809314
RNA-Seq ExpressionSed0017721
SyntenySed0017721
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PHU28673.1 Protein LOL1, partial [Capsicum chinense]1.7e-3664.03Show/hide
Query:  VNMHFVDHQPHRASLCAPDVETFCFIRLEQPLF-AVQFVMQKVG---------NVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        V++H   HQPH   L     ET       +P+   +  ++  VG         N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E
Subjt:  VNMHFVDHQPHRASLCAPDVETFCFIRLEQPLF-AVQFVMQKVG---------NVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

Query:  ANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        ANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
Subjt:  ANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

RLM60365.1 hypothetical protein C2845_PM14G03340 [Panicum miliaceum]2.9e-3668.6Show/hide
Query:  VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK--LSFCPI----LGIIR
        V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG S+   L++C      L  ++
Subjt:  VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK--LSFCPI----LGIIR

Query:  KLKTPNRTDIQNAATKDYATC
         L++P +   +  A   + TC
Subjt:  KLKTPNRTDIQNAATKDYATC

XP_009785779.1 PREDICTED: protein LSD1-like, partial [Nicotiana sylvestris]1.3e-3693.9Show/hide
Query:  TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS
        TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNF+T+VGVSIK S
Subjt:  TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS

XP_019445974.1 PREDICTED: protein LOL1 isoform X2 [Lupinus angustifolius]3.7e-3689.89Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSI
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVSI
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSI

XP_038887481.1 protein LOL1 isoform X1 [Benincasa hispida]1.1e-4066.23Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLSFCPILGII
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGV             
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLSFCPILGII

Query:  RKLKTPNRTDIQNAATKDYATCLNVDECNRTKSLTAKVIVNMVVPNSRTAA
                               +V+E +R+KSL AKVIVNMVVPNS TAA
Subjt:  RKLKTPNRTDIQNAATKDYATCLNVDECNRTKSLTAKVIVNMVVPNSRTAA

TrEMBL top hitse value%identityAlignment
A0A1U7XFQ3 protein LSD1-like6.2e-3793.9Show/hide
Query:  TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS
        TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNF+T+VGVSIK S
Subjt:  TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS

A0A2G3DCI1 Protein LOL1 (Fragment)8.1e-3764.03Show/hide
Query:  VNMHFVDHQPHRASLCAPDVETFCFIRLEQPLF-AVQFVMQKVG---------NVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        V++H   HQPH   L     ET       +P+   +  ++  VG         N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E
Subjt:  VNMHFVDHQPHRASLCAPDVETFCFIRLEQPLF-AVQFVMQKVG---------NVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

Query:  ANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        ANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
Subjt:  ANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

A0A3L6PNX9 Uncharacterized protein1.4e-3668.6Show/hide
Query:  VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK--LSFCPI----LGIIR
        V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG S+   L++C      L  ++
Subjt:  VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK--LSFCPI----LGIIR

Query:  KLKTPNRTDIQNAATKDYATC
         L++P +   +  A   + TC
Subjt:  KLKTPNRTDIQNAATKDYATC

A0A7J8XQF1 Uncharacterized protein (Fragment)1.8e-3687.78Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVS++
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK

M1BH58 LOL1 (LSD ONE LIKE 1)3.6e-3788.04Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIK S
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS

SwissProt top hitse value%identityAlignment
P94077 Protein LSD11.0e-2058.33Show/hide
Query:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+V +S
Subjt:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

Q0J7V9 Protein LSD17.1e-3892.59Show/hide
Query:  VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSVKCAVCNFVTSVG S
Subjt:  VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

Q2QMB3 Protein LOL23.8e-2356.47Show/hide
Query:  VSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        VS      G ++A L+CGGC TLLMY R ATSV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ G++
Subjt:  VSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

Q6ASS2 Protein LOL38.4e-2362.67Show/hide
Query:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        EMA L+CGGC TLLMY R A +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ G++
Subjt:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

Q93ZB1 Protein LOL13.5e-3787.5Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 12.9e-3965.94Show/hide
Query:  LLLVYSIEVVNMHFVDHQPHRASLCAPDVETFCFIRLEQPLFAVQFVMQKVGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA
        L LV  I   N+ FV     ++ L    V + C   L  P+ A   V   V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA
Subjt:  LLLVYSIEVVNMHFVDHQPHRASLCAPDVETFCFIRLEQPLFAVQFVMQKVGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEA

Query:  NQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        NQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Subjt:  NQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

AT1G32540.2 lsd one like 12.5e-3887.5Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

AT1G32540.3 lsd one like 12.5e-3887.5Show/hide
Query:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG S
Subjt:  VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

AT4G20380.1 LSD1 zinc finger family protein7.3e-2258.33Show/hide
Query:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+V +S
Subjt:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS

AT4G20380.2 LSD1 zinc finger family protein7.3e-2258.33Show/hide
Query:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS
        +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+V +S
Subjt:  EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGGGGAGTATGCCTTTCTTCAAATGTCAAAACTTTTACATCCTTTCTCTCTTCCCCCCTCCACTCTATCTTCTCCAAGTTGCAAACCTATGAATTTGCCCCACT
ACTTCCCACCAAAAACTCCATTGCCTTTTTCAAGCTTTCTTTCTTGCTTGGTTTCTCCATTTCTGGTTTTGATTTGTTATTGGTATACTCAATTGAGGTTGTAAATATGC
ATTTTGTTGATCATCAGCCGCACAGAGCCAGCTTGTGTGCTCCGGATGTCGAAACCTTTTGCTTTATCCGGTTGGAGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAA
AAGGTTGGAAATGTTAGTTGGTTTGTGTCTAAAACAGGCACAGAAATGGCACAACTGGTGTGCGGAGGCTGCCATACTCTGCTCATGTATATTCGCGGTGCTACGAGTGT
ACAGTGCTCGTGTTGCCACACCGTCAACTTAGCTTTAGAAGCGAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGTT
CAGTGAAATGTGCAGTATGCAATTTTGTGACTTCAGTTGGGGTCAGTATAAAGCTTTCATTTTGTCCAATATTAGGCATCATCAGAAAGCTCAAAACACCAAACAGAACT
GATATTCAAAATGCTGCCACCAAAGATTATGCCACATGCCTTAATGTCGACGAGTGCAATCGAACAAAAAGCCTAACGGCTAAAGTTATCGTAAACATGGTTGTCCCCAA
CTCAAGAACTGCGGCTTCGCAATATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGGGGAGTATGCCTTTCTTCAAATGTCAAAACTTTTACATCCTTTCTCTCTTCCCCCCTCCACTCTATCTTCTCCAAGTTGCAAACCTATGAATTTGCCCCACT
ACTTCCCACCAAAAACTCCATTGCCTTTTTCAAGCTTTCTTTCTTGCTTGGTTTCTCCATTTCTGGTTTTGATTTGTTATTGGTATACTCAATTGAGGTTGTAAATATGC
ATTTTGTTGATCATCAGCCGCACAGAGCCAGCTTGTGTGCTCCGGATGTCGAAACCTTTTGCTTTATCCGGTTGGAGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAA
AAGGTTGGAAATGTTAGTTGGTTTGTGTCTAAAACAGGCACAGAAATGGCACAACTGGTGTGCGGAGGCTGCCATACTCTGCTCATGTATATTCGCGGTGCTACGAGTGT
ACAGTGCTCGTGTTGCCACACCGTCAACTTAGCTTTAGAAGCGAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGTT
CAGTGAAATGTGCAGTATGCAATTTTGTGACTTCAGTTGGGGTCAGTATAAAGCTTTCATTTTGTCCAATATTAGGCATCATCAGAAAGCTCAAAACACCAAACAGAACT
GATATTCAAAATGCTGCCACCAAAGATTATGCCACATGCCTTAATGTCGACGAGTGCAATCGAACAAAAAGCCTAACGGCTAAAGTTATCGTAAACATGGTTGTCCCCAA
CTCAAGAACTGCGGCTTCGCAATATTCATAA
Protein sequenceShow/hide protein sequence
MKGGVCLSSNVKTFTSFLSSPLHSIFSKLQTYEFAPLLPTKNSIAFFKLSFLLGFSISGFDLLLVYSIEVVNMHFVDHQPHRASLCAPDVETFCFIRLEQPLFAVQFVMQ
KVGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLSFCPILGIIRKLKTPNRT
DIQNAATKDYATCLNVDECNRTKSLTAKVIVNMVVPNSRTAASQYS