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Sed0017747 (gene) of Chayote v1 genome

Gene IDSed0017747
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S26
Genome locationLG03:2061031..2063647
RNA-Seq ExpressionSed0017747
SyntenySed0017747
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000892 - Ribosomal protein S26e
IPR038551 - Ribosomal protein S26e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602587.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]5.0e-6396.92Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR
        FIRRRDD PKPGQPG APR  AGAGAPPPR
Subjt:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR

XP_004138397.1 40S ribosomal protein S26-3 [Cucumis sativus]1.1e-6296.12Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA
        FIRRRDDAPKPGQ GQ PR GAG  PPRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA

XP_008456772.1 PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo]5.0e-6396.12Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA
        FIRRRDDAPKPGQPGQ PR GAG  PPRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA

XP_022923523.1 40S ribosomal protein S26-3-like [Cucurbita moschata]1.0e-6397.69Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR
        FIRRRDD PKPGQPGQAPR  AGAGAPPPR
Subjt:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR

XP_038884330.1 40S ribosomal protein S26-3-like [Benincasa hispida]1.0e-6396.9Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA
        FIRRRDDAPKPGQPGQAPR GAG  PPRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA

TrEMBL top hitse value%identityAlignment
A0A0A0KDG9 40S ribosomal protein S265.4e-6396.12Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA
        FIRRRDDAPKPGQ GQ PR GAG  PPRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA

A0A1S3C4P8 40S ribosomal protein S262.4e-6396.12Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA
        FIRRRDDAPKPGQPGQ PR GAG  PPRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA

A0A5A7UA01 40S ribosomal protein S262.4e-6396.12Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA
        FIRRRDDAPKPGQPGQ PR GAG  PPRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPPRA

A0A6J1E9V7 40S ribosomal protein S264.9e-6497.69Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR
        FIRRRDD PKPGQPGQAPR  AGAGAPPPR
Subjt:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR

A0A6J1JRW7 40S ribosomal protein S264.9e-6497.69Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR
        FIRRRDD PKPGQPGQAPR  AGAGAPPPR
Subjt:  FIRRRDDAPKPGQPGQAPR--AGAGAPPPR

SwissProt top hitse value%identityAlignment
O45499 40S ribosomal protein S267.6e-3867.8Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAP
        F  +R  A +PG PG  P
Subjt:  FIRRRDDAPKPGQPGQAP

P49206 40S ribosomal protein S26-15.8e-5484.8Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR-AGAGA
        F RR++D PKPGQPGQAPR AG GA
Subjt:  FIRRRDDAPKPGQPGQAPR-AGAGA

P49216 40S ribosomal protein S262.8e-4876.38Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAPPP
        F RRR+D P      Q PR G GAP P
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAPPP

Q8LPJ7 40S ribosomal protein S26-25.8e-5484.8Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR-AGAGA
        F RR++D PKPGQPGQAPR AG GA
Subjt:  FIRRRDDAPKPGQPGQAPR-AGAGA

Q9LYK9 40S ribosomal protein S26-32.6e-5483.08Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAP-PPRA
        F RR++D PKP QPGQAPR   GAP  PRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAP-PPRA

Arabidopsis top hitse value%identityAlignment
AT2G40510.1 Ribosomal protein S26e family protein4.1e-5584.8Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR-AGAGA
        F RR++D PKPGQPGQAPR AG GA
Subjt:  FIRRRDDAPKPGQPGQAPR-AGAGA

AT2G40590.1 Ribosomal protein S26e family protein4.1e-5584.8Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPR-AGAGA
        F RR++D PKPGQPGQAPR AG GA
Subjt:  FIRRRDDAPKPGQPGQAPR-AGAGA

AT3G56340.1 Ribosomal protein S26e family protein1.9e-5583.08Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQR

Query:  FIRRRDDAPKPGQPGQAPRAGAGAP-PPRA
        F RR++D PKP QPGQAPR   GAP  PRA
Subjt:  FIRRRDDAPKPGQPGQAPRAGAGAP-PPRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGCCATGTGAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAAGCCATCAA
GAGGTTTCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCATGTGTCTATGATCAATACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACT
GTGTTTCCTGTGCTATTCACTCCCATGTTGTGAGGGTTCGATCACGAACTGACAGAAGGAAACGTGAGCCTCCACAGCGCTTCATTCGACGCAGGGATGATGCCCCAAAA
CCCGGACAGCCAGGTCAGGCCCCTCGTGCAGGTGCTGGAGCTCCTCCTCCCCGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
GTCTCTTGGGCCAAGAATGAAAAACAGAACAAGGTCAGGTCTGTTCCTCTCCATATAAAAGGATCACTACCGCACGTTACAAACCCTAATTCTGCCGACGAGCTCTCTCA
TTCTCTGTGCTTCACTGGTTCATCTCACGGACTTGAATCATGACGTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGCCATGTGAAGTTTATCCGCTGCTC
CAACTGCGGCAAATGCTGCCCTAAGGACAAAGCCATCAAGAGGTTTCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCATGTGTCTATGATC
AATACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCCCATGTTGTGAGGGTTCGATCACGAACTGACAGAAGGAAACGTGAGCCT
CCACAGCGCTTCATTCGACGCAGGGATGATGCCCCAAAACCCGGACAGCCAGGTCAGGCCCCTCGTGCAGGTGCTGGAGCTCCTCCTCCCCGTGCTTGAATTCGATATCT
TATATGCTCTTTAATTTCACCATGGTTGCTCAAATTTCATGGACTTCAATTTTCTTTAGGAATTTTCGATATATTTTGAAGATTTTGTTTTGAGTTATGGAATTATGATG
CTGTACTTCTGAAATCTGATCAATATTTGGTTTAACAAGGTCTTGTTATTGACTCGATT
Protein sequenceShow/hide protein sequence
MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPK
PGQPGQAPRAGAGAPPPRA