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Sed0017754 (gene) of Chayote v1 genome

Gene IDSed0017754
OrganismSechium edule (Chayote v1)
DescriptionGibberellin regulated protein
Genome locationLG10:36389392..36391330
RNA-Seq ExpressionSed0017754
SyntenySed0017754
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8008067.1 hypothetical protein FH972_004614 [Carpinus fangiana]2.9e-1756.32Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        +++F  L LC LLLS+SF+E  MA S  CT  C  RCS A +K RCMKYC ICC +CKCVP G YG +H CPCY      +G+AKCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

KAG6588701.1 Snakin-1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3091.04Show/hide
Query:  METAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP
        METAMA +DVCTRPCRKRCSHAKLKR+CMK+CRICC KCKCVPGAYGKRHCPCYSHVHT+RGRAKCP
Subjt:  METAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP

KAG7022485.1 Snakin-1 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-3886.36Show/hide
Query:  MKTQIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP
        M+ QI+ VG FLC LLLSASFMETAMA +DVCTRPCRKRCSHAKLKR+CMK+CRICC KCKCVPGAYGKRHCPCYSHVHT+RGRAKCP
Subjt:  MKTQIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP

XP_021683427.1 snakin-1-like [Hevea brasiliensis]2.2e-1754.02Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        ++ F  L LC LLLS+SF+E AMA S  CT+ C+ RC+ A +K RC+KYC ICC++CKCVP G YG +H CPCY      +G+ KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

XP_023905168.1 snakin-1-like [Quercus suber]1.1e-1654.02Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        ++ F  L LC LLLS+SF+E AMA S  CT+ C  RCS A ++ RC KYC ICC +CKCVP G YG +H CPCY      +G+ KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z1 Uncharacterized protein2.4e-3885.23Show/hide
Query:  MKTQIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP
        M+T ++ +GLF C LLLSASFM+TAMADSD CTRPCRKRCS AKLKRRCMKYCRICCSKCKCVPG YGKRHCPCYSHVHT+RGRAKCP
Subjt:  MKTQIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP

A0A2C9VJ65 Uncharacterized protein2.0e-1650.57Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        ++ F  L LC LLLS+SF+E  +A S  C   C++RC+ A +K RC+KYC ICC++CKCVP G YG +H CPCY      +G+ KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

A0A2I4F772 snakin-1-like2.6e-1651.72Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        ++ F  L LC LLLS+SF+E AMA S  C+  C+ RC+ A ++ RCMKYC ICC +CKCVP G YG +H C CY      +G+ KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

A0A5N6QLL9 Uncharacterized protein1.4e-1756.32Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        +++F  L LC LLLS+SF+E  MA S  CT  C  RCS A +K RCMKYC ICC +CKCVP G YG +H CPCY      +G+AKCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

B9GHU8 Uncharacterized protein1.2e-1650.57Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        ++ F  L LC LL S+SF+E  MA S  CT+ C  RC++A ++ RC+KYC ICC +CKCVP G YG +H CPCY      +G+ KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

SwissProt top hitse value%identityAlignment
C0HLQ1 Cypmaclein1.2e-1050.85Show/hide
Query:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCV-PGAYGKR-HCPCYSHVHTVRGRAKCP
        C + C +RCS A    RC+KYC ICC KC CV PG YG    CPCY+++   +G  KCP
Subjt:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCV-PGAYGKR-HCPCYSHVHTVRGRAKCP

O80641 Gibberellin-regulated protein 84.9e-1244.83Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYG-KRHCPCYSHVHTVRGRAKCP
        +++ V  F+  LLL++SF   + ADS  C   C  RCS A     C+KYC ICC KC CVP G +G K  CPCY  +   +G +KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYG-KRHCPCYSHVHTVRGRAKCP

P86888 Peamaclein1.6e-1051.61Show/hide
Query:  SDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYG-KRHCPCYSHVHTVRGRAKCP
        S  C   C  RCS A  + RC+KYC ICC KC CVP G YG K  CPCY  +   +G  KCP
Subjt:  SDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYG-KRHCPCYSHVHTVRGRAKCP

Q8LFM2 Gibberellin-regulated protein 102.4e-1145.24Show/hide
Query:  VGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCK-CVP-GAYG-KRHCPCYSHVHTVRGRAKCP
        V + +  LL+++S    + ADS  C   C  RCS A  + RC+KYC ICC KC  CVP G YG K  CPCY  +   +G +KCP
Subjt:  VGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCK-CVP-GAYG-KRHCPCYSHVHTVRGRAKCP

Q948Z4 Snakin-11.2e-1545.98Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        ++  + L L  L+++ S ++T MA S  C   C+ RCS A L  RC+KYC ICC +CKCVP G YG +H CPCY      +G++KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

Arabidopsis top hitse value%identityAlignment
AT1G74670.1 Gibberellin-regulated family protein4.7e-1049.15Show/hide
Query:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCV-PGAYG-KRHCPCYSHVHTVRGRAKCP
        C   C +RCS+ K  + CM +C+ CC+KC CV PG YG K+ CPCY++  T +G  KCP
Subjt:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCV-PGAYG-KRHCPCYSHVHTVRGRAKCP

AT2G14900.1 Gibberellin-regulated family protein1.2e-1049.15Show/hide
Query:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP
        C + C  RC  A +K RC+KYC ICC  C+CVP G YG +H C CY    + +G  KCP
Subjt:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYGKRH-CPCYSHVHTVRGRAKCP

AT2G39540.1 Gibberellin-regulated family protein3.5e-1344.83Show/hide
Query:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYG-KRHCPCYSHVHTVRGRAKCP
        +++ V  F+  LLL++SF   + ADS  C   C  RCS A     C+KYC ICC KC CVP G +G K  CPCY  +   +G +KCP
Subjt:  QIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVP-GAYG-KRHCPCYSHVHTVRGRAKCP

AT3G02885.1 GAST1 protein homolog 53.0e-0949.15Show/hide
Query:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCV-PGAYG-KRHCPCYSHVHTVRGRAKCP
        C   C  RCS    K+ CM +C  CC KC CV PG +G K+ CPCY++  T  GR KCP
Subjt:  CTRPCRKRCSHAKLKRRCMKYCRICCSKCKCV-PGAYG-KRHCPCYSHVHTVRGRAKCP

AT5G59845.1 Gibberellin-regulated family protein1.7e-1245.24Show/hide
Query:  VGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCK-CVP-GAYG-KRHCPCYSHVHTVRGRAKCP
        V + +  LL+++S    + ADS  C   C  RCS A  + RC+KYC ICC KC  CVP G YG K  CPCY  +   +G +KCP
Subjt:  VGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCK-CVP-GAYG-KRHCPCYSHVHTVRGRAKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCCAAATAATGTTCGTGGGTCTGTTCTTGTGTGTTCTTCTCTTAAGTGCTTCTTTCATGGAAACCGCCATGGCCGATTCAGACGTGTGCACGAGACCGTGCAG
GAAGAGGTGCTCGCACGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGCAGGATATGTTGCAGCAAATGCAAGTGTGTGCCCGGGGCTTATGGCAAGCGCCACTGCCCTT
GCTATAGCCATGTTCACACCGTTAGGGGCAGGGCCAAGTGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
GTTTGTTCTTTTAAAAACACAAACTCTTAAAACTGGTATTGGCTCTGTTCAGATTTGAGGAAAAAAAAGAAAAAAAAAAAAAAACTGAGAAATTTTTCAATTTTGATCTG
AAAAAGAAAAAAATGAAAACCCAAATAATGTTCGTGGGTCTGTTCTTGTGTGTTCTTCTCTTAAGTGCTTCTTTCATGGAAACCGCCATGGCCGATTCAGACGTGTGCAC
GAGACCGTGCAGGAAGAGGTGCTCGCACGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGCAGGATATGTTGCAGCAAATGCAAGTGTGTGCCCGGGGCTTATGGCAAGC
GCCACTGCCCTTGCTATAGCCATGTTCACACCGTTAGGGGCAGGGCCAAGTGCCCTTAATTTTTAAGACCATTGTCCTTTAAACCAACCACCCAAATTCTAGAAGAAAAA
AAAGACCAATAATTTTGTCTTTAAATTGAATATTAAAGCTTGAGAGTTTGTGAGTCAGGTTTGGTGTGCTTTTAGTTTAATAAACAATGTGTATCTACTATGGTGTACCT
TGTTTTTATTATTTAAGACCCTCTTGTATTTTACTATATGTACCTAAAAGATCCAATGGTTGTTGGGTTTTCATTGCATAAGAATGCTATTATTATATCTCTCCCTAAAT
Protein sequenceShow/hide protein sequence
MKTQIMFVGLFLCVLLLSASFMETAMADSDVCTRPCRKRCSHAKLKRRCMKYCRICCSKCKCVPGAYGKRHCPCYSHVHTVRGRAKCP