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Sed0017781 (gene) of Chayote v1 genome

Gene IDSed0017781
OrganismSechium edule (Chayote v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationLG05:12462577..12463442
RNA-Seq ExpressionSed0017781
SyntenySed0017781
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2369.37Show/hide
Query:  MASMAMTASFLPIAANHSS---ATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVV
        MASM++TASFLP  A   S   A AR+AL + KAST A ATD+ SN NLEIKNVKVES  GRRELVA +V VA A+FAK AMADEP RG++EAKQKYA +
Subjt:  MASMAMTASFLPIAANHSS---ATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVV

Query:  CVTNPTARICR
        CVT PTARICR
Subjt:  CVTNPTARICR

XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]1.1e-2369.16Show/hide
Query:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN
        MASMAMTASFLP  A    S+TAR+ LI+AKAS  T+  ASN N+E+KNVKVES  GRRELVA +V VA A+ AK AMADEP RG+ EAKQKYA +CVT 
Subjt:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]3.8e-2471.03Show/hide
Query:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN
        MASMAMTASFLP  A    SAT R+ALI+AKAST+  T  SN NLE+KNVKVES  GRRELVA +V VA A+ AK AMADEP RG+ EAKQKYA +CVT 
Subjt:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]3.8e-2470.64Show/hide
Query:  MASMAMTASFLPIAANH-SSATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCV
        MASM++TASFLP  A   S+A AR+AL + KAST A ATD+ SN NLEIKNVKVES  GRRELVA +V VA A+FAK AMADEP RG++EAKQKYA +CV
Subjt:  MASMAMTASFLPIAANH-SSATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCV

Query:  TNPTARICR
        T PTARICR
Subjt:  TNPTARICR

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]4.4e-2571.03Show/hide
Query:  MASMAMTASFLPIAANHSSAT-ARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN
        MASMAMTASFLP  AN   +T AR+AL++AKAS  T++DASN NLEIKNVKVE+  GRRELVA +V VA A+ AK AMADEP RG+ EAKQKYA +CVT 
Subjt:  MASMAMTASFLPIAANHSSAT-ARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein5.3e-2469.16Show/hide
Query:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN
        MASMAMTASFLP  A    S+TAR+ LI+AKAS  T+  ASN N+E+KNVKVES  GRRELVA +V VA A+ AK AMADEP RG+ EAKQKYA +CVT 
Subjt:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic1.8e-2471.03Show/hide
Query:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN
        MASMAMTASFLP  A    SAT R+ALI+AKAST+  T  SN NLE+KNVKVES  GRRELVA +V VA A+ AK AMADEP RG+ EAKQKYA +CVT 
Subjt:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A5A7TID9 Photosystem II 5 kDa protein1.8e-2471.03Show/hide
Query:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN
        MASMAMTASFLP  A    SAT R+ALI+AKAST+  T  SN NLE+KNVKVES  GRRELVA +V VA A+ AK AMADEP RG+ EAKQKYA +CVT 
Subjt:  MASMAMTASFLP-IAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTN

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic1.8e-2470.64Show/hide
Query:  MASMAMTASFLPIAANH-SSATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCV
        MASM++TASFLP  A   S+A AR+AL + KAST A ATD+ SN NLEIKNVKVES  GRRELVA +V VA A+FAK AMADEP RG++EAKQKYA +CV
Subjt:  MASMAMTASFLPIAANH-SSATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCV

Query:  TNPTARICR
        T PTARICR
Subjt:  TNPTARICR

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic1.8e-2470.64Show/hide
Query:  MASMAMTASFLPIAANH-SSATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCV
        MASM++TASFLP  A   S+A AR+AL + KAST A ATD+ SN NLEIKNVKVES  GRRELVA +V VA A+FAK AMADEP RG++EAKQKYA +CV
Subjt:  MASMAMTASFLPIAANH-SSATARKALIIAKAST-ATATDA-SNTNLEIKNVKVES--GRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCV

Query:  TNPTARICR
        T PTARICR
Subjt:  TNPTARICR

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.4e-1047.71Show/hide
Query:  MASMAMTASFL---PIAANHSSATARKALIIAKASTATATD-ASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMAD-EPKRGTSEAKQKYAVVCV
        MAS+ M +SFL    +A     +  R+ +++ KA      +   + N E KN    SGRREL       A  S AK AMAD EPKRGT EAK+KY+ VCV
Subjt:  MASMAMTASFL---PIAANHSSATARKALIIAKASTATATD-ASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMAD-EPKRGTSEAKQKYAVVCV

Query:  TNPTARICR
        TNPTARICR
Subjt:  TNPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic2.1e-0942.06Show/hide
Query:  MASMAMTASFLPIA--ANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTNP
        MAS+ MT SFL        S    ++ L++A A+     ++   + E +  +  +GRRE++  +   A+ S A VA A EPKRG++EAK+ YA VCVT P
Subjt:  MASMAMTASFLPIA--ANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTNP

Query:  TARICRN
        TARICRN
Subjt:  TARICRN

Q39195 Photosystem II 5 kDa protein, chloroplastic1.9e-1551.89Show/hide
Query:  MASMAMTASFLPIAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMA--DEPKRGTSEAKQKYAVVCVTNP
        MASM MTA+F P  A   SAT  + L + +AST+  T     +LE+K     + RR+L+ T+   AV S AKVAMA  +EPKRGT  AK+KYA VCVT P
Subjt:  MASMAMTASFLPIAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMA--DEPKRGTSEAKQKYAVVCVTNP

Query:  TARICR
        TA+ICR
Subjt:  TARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein6.2e-1751.38Show/hide
Query:  MASMAMTASFLPIAAN---HSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMA-DEPKRGTSEAKQKYAVVCVT
        MASM MT+SFLP  +N   + S+ +R++L + KAS +  T +     + +++K+   RR+LV T+   AV S AKVAMA DEPKRGT  AK+KYA VCVT
Subjt:  MASMAMTASFLPIAAN---HSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMA-DEPKRGTSEAKQKYAVVCVT

Query:  NPTARICRN
         PTA+ICRN
Subjt:  NPTARICRN

AT3G21055.1 photosystem II subunit T1.4e-1651.89Show/hide
Query:  MASMAMTASFLPIAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMA--DEPKRGTSEAKQKYAVVCVTNP
        MASM MTA+F P  A   SAT  + L + +AST+  T     +LE+K     + RR+L+ T+   AV S AKVAMA  +EPKRGT  AK+KYA VCVT P
Subjt:  MASMAMTASFLPIAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMA--DEPKRGTSEAKQKYAVVCVTNP

Query:  TARICR
        TA+ICR
Subjt:  TARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCATGGCTATGACAGCCTCCTTCCTCCCCATTGCTGCCAACCACTCCTCCGCCACCGCCCGAAAAGCACTCATCATCGCCAAGGCCTCCACCGCCACTGCCAC
TGACGCCTCCAACACCAACTTGGAGATCAAGAATGTGAAGGTTGAGAGCGGGCGGCGGGAGTTGGTAGCGACTTCCGTGATAGTGGCGGTGGCAAGCTTTGCGAAGGTGG
CAATGGCGGACGAGCCCAAGCGTGGCACCTCTGAAGCCAAGCAGAAGTATGCTGTGGTCTGTGTAACAAATCCCACTGCACGTATTTGCCGAAACTGA
mRNA sequenceShow/hide mRNA sequence
GTTTATAATGACATAGAGATAAAGGAAGAACATGTGGCAAGAAAGTAGTGGGTTAGAAAATCTGTTAGGATAAGGAAATGGATGATGTTTTATTGAAGAATCAAACATGA
AGCTTGAATCAGTTGGGCACACTCCTAAACATAACTATATCCTCCTTCCCCCTAACCATTATTAACAATCTCTCCAATCCTCAATTCCTCCAAAGCCCTAAACATGGCAT
CCATGGCTATGACAGCCTCCTTCCTCCCCATTGCTGCCAACCACTCCTCCGCCACCGCCCGAAAAGCACTCATCATCGCCAAGGCCTCCACCGCCACTGCCACTGACGCC
TCCAACACCAACTTGGAGATCAAGAATGTGAAGGTTGAGAGCGGGCGGCGGGAGTTGGTAGCGACTTCCGTGATAGTGGCGGTGGCAAGCTTTGCGAAGGTGGCAATGGC
GGACGAGCCCAAGCGTGGCACCTCTGAAGCCAAGCAGAAGTATGCTGTGGTCTGTGTAACAAATCCCACTGCACGTATTTGCCGAAACTGATTTTCTTAGATGTTCTCTC
TGTTGTGTCTTATTTTTCCCCCTTCCTCCCCATTAAACTCTTTCCTTTGAGTTCATAATTTGGAGTTTAATTGTAAAATCTGTTAAACAAAGCTATGAATCATTCTTCAT
GTCTTTCTCTTGTTTTATACTAGTTGCAAATTACAACTTTGATCCAACCATAAATTAAATTCACTCTGGTTTTAACCCATGGGATTTAACTACCTCCTAATATGTTACTG
TTATAATTTCAAATTATTACTTTGTATGGGTGAATTTGTAACTTTCTAGTTCAAAAATCACAATCAAAACAGAAATATGAGCAAGTCTTAGCAATC
Protein sequenceShow/hide protein sequence
MASMAMTASFLPIAANHSSATARKALIIAKASTATATDASNTNLEIKNVKVESGRRELVATSVIVAVASFAKVAMADEPKRGTSEAKQKYAVVCVTNPTARICRN