CuGenDBv2

Gene ID	Sed0017793
Organism	Sechium edule (Chayote v1)
Description	Eukaryotic translation initiation factor 4C
Genome location	LG01:4034828..4037577
RNA-Seq Expression	Sed0017793
Synteny	Sed0017793
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR001253 - Translation initiation factor 1A (eIF-1A) IPR006196 - RNA-binding domain, S1, IF1 type IPR012340 - Nucleic acid-binding, OB-fold IPR018104 - Translation initiation factor 1A (eIF-1A), conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008457652.1 PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo]

8.8e-61

90.51

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGG DDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

XP_015888844.1 eukaryotic translation initiation factor 1A-like [Ziziphus jujuba]

1.5e-60

89.78

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQV RMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELPDST L+EGIA+G+   DDGGADDY+EF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

XP_019159005.1 PREDICTED: eukaryotic translation initiation factor 1A [Ipomoea nil]

2.0e-60

89.05

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP++T L+EGIA G+   DDGGADDY+EF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

XP_021280987.1 eukaryotic translation initiation factor 1A [Herrania umbratica]

1.5e-60

89.05

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP++T L+EGIA GI   DDGGADDY+EF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

XP_022145199.1 eukaryotic translation initiation factor 1A [Momordica charantia]

3.0e-61

91.24

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGGADDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C6N4 Eukaryotic translation initiation factor 4C

4.3e-61

90.51

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGG DDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

A0A5A7TS70 Eukaryotic translation initiation factor 4C

4.3e-61

90.51

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGG DDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

A0A6J1CUI5 Eukaryotic translation initiation factor 4C

1.5e-61

91.24

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGGADDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

A0A6J1GY26 Eukaryotic translation initiation factor 4C

1.5e-61

91.24

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGGADDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

A0A6J1IS99 Eukaryotic translation initiation factor 4C

1.5e-61

91.24

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP+ST L+EGIA GI   DDGGADDYLEF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

SwissProt top hits

e value

%identity

Alignment

P47813 Eukaryotic translation initiation factor 1A, X-chromosomal

5.8e-47

71.11

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKE GQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD KADVILKY   EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFN
        R LKAYGELP+   ++E    G    G DD ++F+
Subjt:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFN

P47815 Eukaryotic translation initiation factor 1A

8.0e-57

80.88

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADD+KRELVFKE GQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWI AGDI+LVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGI-ASGIDDG-GADDYLEF
        RLLKAYGELPD+  L+EG+   G ++G G  DY++F
Subjt:  RLLKAYGELPDSTSLDEGI-ASGIDDG-GADDYLEF

P56331 Eukaryotic translation initiation factor 1A

1.9e-58

85.4

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADD+KRELVFKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILK M  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGI-ASGIDD--GGADDYLEF
        RLLKAYGELPD+T L+EGI A G+D+    A+DY+EF
Subjt:  RLLKAYGELPDSTSLDEGI-ASGIDD--GGADDYLEF

Q5RA42 Eukaryotic translation initiation factor 1A, X-chromosomal

5.8e-47

71.11

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKE GQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD KADVILKY   EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFN
        R LKAYGELP+   ++E    G    G DD ++F+
Subjt:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFN

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal

5.8e-47

71.11

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNR+RGKNE + EKRELVFKE GQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD KADVILKY   EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFN
        R LKAYGELP+   ++E    G    G DD ++F+
Subjt:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFN

Arabidopsis top hits

e value

%identity

Alignment

AT2G04520.1 Nucleic acid-binding, OB-fold-like protein

7.2e-61

83.94

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKE GQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWI AGDI+LVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF
        RLLKAYGELP++T L+EGI   +   DD   DDY+EF
Subjt:  RLLKAYGELPDSTSLDEGIASGI---DDGGADDYLEF

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein

3.0e-59

81.75

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKE GQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGIDDGG---ADDYLEF
        RLLKAYGELP++T L+EGI   +DD      +DY+EF
Subjt:  RLLKAYGELPDSTSLDEGIASGIDDGG---ADDYLEF

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein

3.0e-59

81.75

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKE GQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGIDDGG---ADDYLEF
        RLLKAYGELP++T L+EGI   +DD      +DY+EF
Subjt:  RLLKAYGELPDSTSLDEGIASGIDDGG---ADDYLEF

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein

2.6e-58

80.58

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Query:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA
        MPKNKGKGGKNRKRGKNEADDEKREL+FKE GQEYAQVLRMLGNGRC+ MCIDG KRLCHIRGKMHKKVWI AGDIILVGLRDYQD KADVILKYM  EA
Subjt:  MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEA

Query:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFNFSSM
        RLLKAYGELP++T L+EGI   +DD   DD   F   S+
Subjt:  RLLKAYGELPDSTSLDEGIASGIDDGGADDYLEFNFSSM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCAAAGAATAAGGGAAAGGGAGGTAAAAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGCTGGTCAGGAGTATGCACA
AGTCCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATAGATGGCACAAAGCGCCTTTGCCATATCCGGGGGAAGATGCACAAGAAGGTCTGGATTGAAGCTG
GTGATATCATACTTGTTGGTCTTCGTGACTATCAGGATGGCAAAGCTGATGTCATCCTCAAGTATATGCGATACGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCT
GACAGCACAAGTCTCGACGAAGGTATTGCCAGTGGTATCGATGATGGTGGGGCTGATGATTATCTGGAGTTTAACTTTTCAAGTATGATTGGATGA

mRNA sequence

Show/hide mRNA sequence

ATTGTTCGAAAATTCGTATAGATAACGAAAACGCAAGCTAAGGCTCCCATTTCCACCGGGATTCTGCTTCTTCTTCGCATTCTCTTCTTTGATTAAGAAACAGAAAACAT
GCCAAAGAATAAGGGAAAGGGAGGTAAAAACAGGAAGAGAGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAAGCTGGTCAGGAGTATGCACAAG
TCCTCAGAATGTTGGGGAACGGTCGGTGCGAGGCAATGTGCATAGATGGCACAAAGCGCCTTTGCCATATCCGGGGGAAGATGCACAAGAAGGTCTGGATTGAAGCTGGT
GATATCATACTTGTTGGTCTTCGTGACTATCAGGATGGCAAAGCTGATGTCATCCTCAAGTATATGCGATACGAAGCAAGGCTGTTGAAGGCATATGGTGAGCTTCCTGA
CAGCACAAGTCTCGACGAAGGTATTGCCAGTGGTATCGATGATGGTGGGGCTGATGATTATCTGGAGTTTAACTTTTCAAGTATGATTGGATGAAGATATTGAAAAATTT
TATAATTTGAGTGAGTTTTTTCATCTGTGGAGTTTAGTGTAACAGATGAATGACTATGGAGGATTTGTAATATGGATTTGCTCCATGGTTGTTAAGAACAAGGGGGCAAT
TGCGCCAGTCTTAGATTGGAAAATGTGTAGCTTTTTCTAGTCTTATGTCTTCAAGTTAGATTACATACATAAAGTTTGACCATAAAATTTACAGTATTTATCTCTGTTAC
TGAATTGTTGCTTGTTTCGTATGAATCTATGTTGAGATATGCATAAAGGCGTCGTTAAGTTTTCCTTTGA

Protein sequence

Show/hide protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEAGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIEAGDIILVGLRDYQDGKADVILKYMRYEARLLKAYGELP
DSTSLDEGIASGIDDGGADDYLEFNFSSMIG

Sed0017793 (gene) of Chayote v1 genome