CuGenDBv2

Gene ID	Sed0017795
Organism	Sechium edule (Chayote v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	LG12:7591543..7597518
RNA-Seq Expression	Sed0017795
Synteny	Sed0017795
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

8.2e-214

88.04

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MA+AT+PL  FHH  +LSNPKS TI RP+LP      SQ  F +SI  C SSTSQSPE NL SAES VN GLQLFSKGRVKEALVQFEAALNMDPNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+R+FFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGI+ FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPAT-ASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP
        S+IQKAERFRTELL+RG+LLVPVIWGEGRE QIEKKGFGAP T A+ ALPSIGEDFEKRAQSITAKSKLK+EIRFRAEVISPAEWESWI++QQ+SEGVTP
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPAT-ASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP

Query:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        GEDVYIILRLDGRVRRSGRGMPDW KIIEELPP EALLSKLE+
Subjt:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

7.2e-218

89.14

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MA+AT+PL  FHH  +LSNPKS TI RP+LP      SQ  FH+SI  C SSTSQSPE NL SAES VNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAA YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+RRFFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGI+ FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG
        S+IQKAERFRTELL+RG+LLVPVIWGEGRE QIEKKGFGAPA A+TALPSIGEDFEKRAQSITAKSKLK+EIRFRAEVISPAEWESWI+DQQKSEGVTPG
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        EDVYIILRLDGR+RRSGRGMPDW KIIEELPP EALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

XP_022143429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]

2.5e-218

87.78

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MAVAT+PLY  HH L  SNPKSRT  RP+LP +S FN   NFH+SIA+C SSTSQSPE N+++AES VNLGLQLFSKGRVKEALVQF+AALN+DPNP+EA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAA YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EAR+GGED+GYGFRRDLKLISEVQAPFRG+R+FFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVN+GGI+  VAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG
        S+IQKAERFRTELL+RG+LLVPV+WGEGRE QIEK+GFGAP  A+  LPSIGEDFEKRAQSITAKSKLK+EIRFRAEV+SPAEWESWI+DQQKSEGVTPG
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPP EALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

9.1e-213

87.36

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        + +AT+P+  FH  L+LSNPKS TI R +LP S   NSQ  FHVSI  C SSTSQSPE N++SAESSVNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+RRFFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF +PRLFRAIQGG+EAPDVWET GNLAVN+GGIV FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATA-STALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP
        S+IQKAERFRTELL+RG+LLVPVIW EGRE ++EKKGFGAPA A S ALPSIGEDFEKRAQSITAKSKLK+EIRFRA+VISPAEWESWI+DQQKSEGVTP
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATA-STALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP

Query:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        GEDVYIILRLDGRVRRSGRGMPDW KIIEELPP +ALLSKLER
Subjt:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

3.3e-215

88.69

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MA+AT+PL  FHH L+ S+PKS TI RP+     L  SQ  FHVSI  C SSTSQSPE NL+SAES VNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+RRFF VALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGIV FVAL LWDNKKEEEQ++QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG
        S+IQKAERFRTELL+RG+LLVPVIWGEGRE QIEKKGFGAPAT + ALPSIGEDFEKRAQSITAKSKLK+EIRFRAEV+SPAEWESWI+DQQKSE VTPG
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPP EALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

4.0e-214

88.04

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MA+AT+PL  FHH  +LSNPKS TI RP+LP      SQ  F +SI  C SSTSQSPE NL SAES VN GLQLFSKGRVKEALVQFEAALNMDPNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+R+FFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGI+ FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPAT-ASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP
        S+IQKAERFRTELL+RG+LLVPVIWGEGRE QIEKKGFGAP T A+ ALPSIGEDFEKRAQSITAKSKLK+EIRFRAEVISPAEWESWI++QQ+SEGVTP
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPAT-ASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP

Query:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        GEDVYIILRLDGRVRRSGRGMPDW KIIEELPP EALLSKLE+
Subjt:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

3.5e-218

89.14

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MA+AT+PL  FHH  +LSNPKS TI RP+LP      SQ  FH+SI  C SSTSQSPE NL SAES VNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAA YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+RRFFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGI+ FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG
        S+IQKAERFRTELL+RG+LLVPVIWGEGRE QIEKKGFGAPA A+TALPSIGEDFEKRAQSITAKSKLK+EIRFRAEVISPAEWESWI+DQQKSEGVTPG
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        EDVYIILRLDGR+RRSGRGMPDW KIIEELPP EALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

3.5e-218

89.14

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MA+AT+PL  FHH  +LSNPKS TI RP+LP      SQ  FH+SI  C SSTSQSPE NL SAES VNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAA YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+RRFFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGI+ FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG
        S+IQKAERFRTELL+RG+LLVPVIWGEGRE QIEKKGFGAPA A+TALPSIGEDFEKRAQSITAKSKLK+EIRFRAEVISPAEWESWI+DQQKSEGVTPG
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        EDVYIILRLDGR+RRSGRGMPDW KIIEELPP EALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.2e-218

87.78

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        MAVAT+PLY  HH L  SNPKSRT  RP+LP +S FN   NFH+SIA+C SSTSQSPE N+++AES VNLGLQLFSKGRVKEALVQF+AALN+DPNP+EA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAA YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EAR+GGED+GYGFRRDLKLISEVQAPFRG+R+FFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVN+GGI+  VAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG
        S+IQKAERFRTELL+RG+LLVPV+WGEGRE QIEK+GFGAP  A+  LPSIGEDFEKRAQSITAKSKLK+EIRFRAEV+SPAEWESWI+DQQKSEGVTPG
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPP EALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

4.4e-213

87.36

Show/hide

Query:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA
        + +AT+P+  FH  L+LSNPKS TI R +LP S   NSQ  FHVSI  C SSTSQSPE N++SAESSVNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEA
Subjt:  MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEA

Query:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA
        QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQ EARMGGED+GYGFRRDLKLISEVQAPFRG+RRFFYVALSAAA
Subjt:  QAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAA

Query:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS
        GISLLF +PRLFRAIQGG+EAPDVWET GNLAVN+GGIV FVAL LWDNKKEEEQ+AQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVS
Subjt:  GISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS

Query:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATA-STALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP
        S+IQKAERFRTELL+RG+LLVPVIW EGRE ++EKKGFGAPA A S ALPSIGEDFEKRAQSITAKSKLK+EIRFRA+VISPAEWESWI+DQQKSEGVTP
Subjt:  SSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATA-STALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTP

Query:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        GEDVYIILRLDGRVRRSGRGMPDW KIIEELPP +ALLSKLER
Subjt:  GEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

1.9e-173

69.32

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Query:  MAVATIPLYQFHHFLSLSNPKSRT-IFRPQLP--KSSLFNSQTNFHVSI-AYCSSSTSQS---PEPNLD----SAESSVNLGLQLFSKGRVKEALVQFEA
        MAVAT P    H    +SN  SR    RP LP   ++LFNS+ N+   +  Y SSS+S S   P PN      +AE  VN GL LF +GRVK+ALVQFE 
Subjt:  MAVATIPLYQFHHFLSLSNPKSRT-IFRPQLP--KSSLFNSQTNFHVSI-AYCSSSTSQS---PEPNLD----SAESSVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQ EAR+GGED+G  FRRDLKLISEV+APFRG+R
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIR

Query:  RFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ FT+PRL +AI+GGD AP++ ET GN A+N+GGIV  V+L LW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIK
        VILAGKKETV+ ++QKA+RFRTELL+RG+LLVPV+WGE +  +IEKKGFGA + A+T+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI+
Subjt:  VILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIK

Query:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        DQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPP + +LSKLER
Subjt:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

1.4e-174

69.32

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Query:  MAVATIPLYQFHHFLSLSNPKSRT-IFRPQLP--KSSLFNSQTNFHVSI-AYCSSSTSQS---PEPNLD----SAESSVNLGLQLFSKGRVKEALVQFEA
        MAVAT P    H    +SN  SR    RP LP   ++LFNS+ N+   +  Y SSS+S S   P PN      +AE  VN GL LF +GRVK+ALVQFE 
Subjt:  MAVATIPLYQFHHFLSLSNPKSRT-IFRPQLP--KSSLFNSQTNFHVSI-AYCSSSTSQS---PEPNLD----SAESSVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQ EAR+GGED+G  FRRDLKLISEV+APFRG+R
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIR

Query:  RFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ FT+PRL +AI+GGD AP++ ET GN A+N+GGIV  V+L LW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIK
        VILAGKKETV+ ++QKA+RFRTELL+RG+LLVPV+WGE +  +IEKKGFGA + A+T+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI+
Subjt:  VILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIK

Query:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER
        DQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPP + +LSKLER
Subjt:  DQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

4.1e-30

28.73

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Query:  DLKLISEVQAPFRGIRRFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRL-
        D ++ SEV +PFR +R FFY+A  A+  +  L    RL  A+     + +V E    L V++G    F  L   +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGIRRFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEI
          N+++ +  LR   R VI AG  E +  + ++++ +   L++RG+++V                  +P           E+  +R + +          
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGREIQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEI

Query:  RFRAEVISPAEWESWIKDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKL
         +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P W   + +LPP + + + L
Subjt:  RFRAEVISPAEWESWIKDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGTGGCTACAATTCCTCTATACCAGTTTCACCATTTCCTCAGCCTCTCAAACCCCAAATCAAGAACCATTTTCAGGCCTCAGCTACCGAAATCCAGCCTCTTCAA
TTCCCAAACCAATTTCCATGTCTCCATTGCATATTGCTCTTCTTCTACTTCTCAATCCCCAGAACCTAATCTCGATTCTGCAGAGTCCTCTGTCAATCTCGGCCTCCAGC
TCTTCTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCCGCACTCAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGT
CATGCCTATCGTGGGGAAGGAAAGAAAGCTGCTGATTGTCTACGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAATGATCCTGACTTGGCCTCATT
CAGAGCTCTTCCTGAATTCAAGGAATTGCAAGGAGAGGCTAGGATGGGAGGAGAGGATGTAGGATATGGCTTTCGAAGAGATCTTAAACTCATTAGTGAAGTCCAAGCAC
CTTTTCGTGGGATTCGGAGGTTCTTTTATGTTGCACTATCTGCAGCCGCTGGAATTTCGTTGTTGTTTACTATACCGAGGTTATTTCGTGCTATTCAAGGTGGTGACGAA
GCTCCTGATGTTTGGGAAACTGCTGGAAATTTGGCTGTTAATCTTGGAGGTATTGTTGCTTTTGTGGCATTACTCTTATGGGACAACAAGAAAGAAGAGGAACAGATTGC
ACAAATATCTAGAAATGAAACACTCTCAAGGTTGCCCCTACGTCTTTCCACCAATCGAATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTG
GGAAAAAGGAGACAGTTTCTTCATCCATCCAAAAGGCAGAAAGGTTTAGAACCGAGCTCCTTAAACGAGGCATTCTCTTAGTTCCTGTCATATGGGGCGAAGGTAGGGAA
ATCCAAATAGAAAAGAAAGGTTTTGGTGCTCCAGCCACTGCATCTACTGCTCTGCCATCTATTGGGGAAGATTTCGAGAAGCGAGCTCAGTCTATAACTGCAAAATCGAA
GTTGAAATCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAAGGACCAGCAGAAGTCTGAAGGGGTTACTCCTGGTGAGGATGTGT
ACATTATATTGCGACTGGATGGTCGAGTTCGAAGATCAGGGAGAGGCATGCCTGACTGGCTAAAAATTATTGAAGAGCTACCACCAACGGAAGCTCTTCTAAGCAAGCTA
GAAAGATGA

mRNA sequence

Show/hide mRNA sequence

TGGGAAACGAACTTGCTATTTCATTAATCTTTTTGACAGTTCACAACTTGATCCTTTGTTGGGATATATTTGATTTTCCGCCATGTGAGAGGTCCCCAACTCGCGAGCTA
AACTTGCCATTGCTATGGCTGTGGCTACAATTCCTCTATACCAGTTTCACCATTTCCTCAGCCTCTCAAACCCCAAATCAAGAACCATTTTCAGGCCTCAGCTACCGAAA
TCCAGCCTCTTCAATTCCCAAACCAATTTCCATGTCTCCATTGCATATTGCTCTTCTTCTACTTCTCAATCCCCAGAACCTAATCTCGATTCTGCAGAGTCCTCTGTCAA
TCTCGGCCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCCGCACTCAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACA
ATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCTGCTGATTGTCTACGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAATGATCCT
GACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGGAGAGGCTAGGATGGGAGGAGAGGATGTAGGATATGGCTTTCGAAGAGATCTTAAACTCATTAG
TGAAGTCCAAGCACCTTTTCGTGGGATTCGGAGGTTCTTTTATGTTGCACTATCTGCAGCCGCTGGAATTTCGTTGTTGTTTACTATACCGAGGTTATTTCGTGCTATTC
AAGGTGGTGACGAAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTGGCTGTTAATCTTGGAGGTATTGTTGCTTTTGTGGCATTACTCTTATGGGACAACAAGAAAGAA
GAGGAACAGATTGCACAAATATCTAGAAATGAAACACTCTCAAGGTTGCCCCTACGTCTTTCCACCAATCGAATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACC
GGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTTCATCCATCCAAAAGGCAGAAAGGTTTAGAACCGAGCTCCTTAAACGAGGCATTCTCTTAGTTCCTGTCATATGGG
GCGAAGGTAGGGAAATCCAAATAGAAAAGAAAGGTTTTGGTGCTCCAGCCACTGCATCTACTGCTCTGCCATCTATTGGGGAAGATTTCGAGAAGCGAGCTCAGTCTATA
ACTGCAAAATCGAAGTTGAAATCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAAGGACCAGCAGAAGTCTGAAGGGGTTACTCC
TGGTGAGGATGTGTACATTATATTGCGACTGGATGGTCGAGTTCGAAGATCAGGGAGAGGCATGCCTGACTGGCTAAAAATTATTGAAGAGCTACCACCAACGGAAGCTC
TTCTAAGCAAGCTAGAAAGATGAAGAAAATGCTTAGCAACTATCAATTGTCACTTTTGCTCGTTCGACTTCCATGCCGACACCGAAAGTGTTTTAGTGGCACACAGAATC
TTAGATAGTTGTTTGTGTTATATTGATCCAAACCTGAAATCACTTTACTTCTTTTTTCTTTGCCTCTTGTTTCTATTTTTCAGAGTTCAATAGAAGATGAGGCAATGAAT
TCTGAGTTCGGTGGATCCTCAATTTCTTGAATTTTGCCAACTTTGTTTTCTTGAACAACATTATCTTTCAAGCAAACTTCTTGTGACACTTGAAGTCAAGTTCAAAATTG
TGATGATAACTAAGAATGCCC

Protein sequence

Show/hide protein sequence

MAVATIPLYQFHHFLSLSNPKSRTIFRPQLPKSSLFNSQTNFHVSIAYCSSSTSQSPEPNLDSAESSVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACC
HAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQGEARMGGEDVGYGFRRDLKLISEVQAPFRGIRRFFYVALSAAAGISLLFTIPRLFRAIQGGDE
APDVWETAGNLAVNLGGIVAFVALLLWDNKKEEEQIAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSSIQKAERFRTELLKRGILLVPVIWGEGRE
IQIEKKGFGAPATASTALPSIGEDFEKRAQSITAKSKLKSEIRFRAEVISPAEWESWIKDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWLKIIEELPPTEALLSKL
ER

Sed0017795 (gene) of Chayote v1 genome