; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017796 (gene) of Chayote v1 genome

Gene IDSed0017796
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L24
Genome locationLG05:45118136..45122099
RNA-Seq ExpressionSed0017796
SyntenySed0017796
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR003256 - Ribosomal protein L24
IPR005824 - KOW
IPR005825 - Ribosomal protein L24/L26, conserved site
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR041988 - Ribosomal protein L26/L24, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG96176.1 KOW domain-containing protein [Prunus dulcis]1.4e-7891.19Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG++KRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLH SNVQVVDP TGKPVKVG +YLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        +KVRVSRG+GASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

XP_016647287.1 PREDICTED: 50S ribosomal protein L24-like [Prunus mume]1.4e-7891.19Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG++KRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLH SNVQVVDP TGKPVKVG +YLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        +KVRVSRG+GASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

XP_022146016.1 uncharacterized protein LOC111015327 [Momordica charantia]1.5e-8095.6Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGL+KRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

XP_022931187.1 uncharacterized protein LOC111437445 [Cucurbita moschata]2.5e-8094.97Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEK+YDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

XP_038889029.1 50S ribosomal protein L24 [Benincasa hispida]8.1e-7993.71Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDP TGKP KVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        SKVRVSRGIGASGSIIPR EILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

TrEMBL top hitse value%identityAlignment
A0A4Y1QWF6 KOW domain-containing protein6.7e-7991.19Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWK+LRGDNVMIIRGKDKGETG++KRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLH SNVQVVDP TGKPVKVG +YLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        +KVRVSRG+GASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMP+L
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

A0A6J1CYB5 uncharacterized protein LOC1110153277.1e-8195.6Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETGL+KRVIR+QNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEKTYDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

A0A6J1EXQ8 uncharacterized protein LOC1114374451.2e-8094.97Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEK+YDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

A0A6J1K0T3 uncharacterized protein LOC1114913631.2e-8094.97Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG++KRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKP KVG RYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDT MDVVLEK+YDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

A0A7J7BYW7 KOW domain-containing protein1.1e-7890.57Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KL+RHWKILRGDNVMIIRGKDKGETGL+KRVIR+QNRVIV+GKNLVKKHIKQG+GHEGGIFTVEAP+HVSN+QVVDP TGKP KVGTRYLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        +KVRVSRGIGASGSIIPRPEILKIRTTPRPT AGPKDT MD+VLEKTYDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

SwissProt top hitse value%identityAlignment
C3PP96 50S ribosomal protein L242.5e-2250.49Show/hide
Query:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q4UMR8 50S ribosomal protein L241.5e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G + +V    ++VIV G NLVKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q68W89 50S ribosomal protein L241.9e-2251.46Show/hide
Query:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG
        K+ +GD V+++ GK KG+ G V +V   +N VIV G NLVKKH K  +  EGGI T E+P+H+SNV  +DP TG P KV  ++LEDGSKVR+++    SG
Subjt:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q92GX7 50S ribosomal protein L242.5e-2250.49Show/hide
Query:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG
        K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Q9ZCR6 50S ribosomal protein L241.1e-2252.43Show/hide
Query:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG
        K+ +GD V+II GK KG+ G V +V   +N V+V G NLVKKH K  +  EGGI T E+P+H+SN+  +DP TG P KV  ++LEDGSKVRV++    SG
Subjt:  KILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASG

Query:  SII
         II
Subjt:  SII

Arabidopsis top hitse value%identityAlignment
AT5G23535.1 KOW domain-containing protein4.4e-7583.65Show/hide
Query:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG
        MGWKAA+KLIRHWKILRGDNVMIIRGKDKGETG +KRVIR+QNRVIVEGKNL+KKHIK G  HEGGIFTVEAPLH SNVQVVDP TG+P KVG +YLEDG
Subjt:  MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDG

Query:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL
        +KVRV+RG G SGSIIPRPEILKIR TPRPT AGPKDT M+ V E+TYDAK GKGMPDL
Subjt:  SKVRVSRGIGASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL

AT5G54600.1 Translation protein SH3-like family protein4.1e-1235.51Show/hide
Query:  GDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII
        GD V +I G+DKG+ G V ++    + ++++  NL  KH+K + +G  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I
Subjt:  GDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSII

Query:  PRPEILK
         + ++LK
Subjt:  PRPEILK

AT5G54600.2 Translation protein SH3-like family protein2.0e-0633.02Show/hide
Query:  GDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIP
        GD V +I G+DKG+ G V ++  T N  I                  G I  +EAP+H SNV +         +VG + LEDG KVR     G     I 
Subjt:  GDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIGASGSIIP

Query:  RPEILK
        + ++LK
Subjt:  RPEILK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGAAGGCTGCTCAGAAGCTTATTAGGCATTGGAAAATTCTTAGAGGAGATAATGTCATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTTTGGTTAAGCG
TGTGATTCGCACCCAAAACCGTGTTATTGTCGAGGGTAAAAACCTGGTGAAGAAACATATTAAACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTC
TTCATGTATCCAATGTTCAAGTTGTTGATCCTGCAACAGGGAAACCTGTTAAGGTTGGTACTAGATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGA
GCCTCAGGTTCAATAATCCCTCGTCCAGAGATCTTAAAGATAAGGACTACACCCAGACCTACAGTTGCTGGTCCCAAGGATACTTCAATGGATGTGGTGCTAGAGAAAAC
TTATGATGCTAAAATAGGGAAGGGCATGCCTGACCTTTAG
mRNA sequenceShow/hide mRNA sequence
TTTCGGTCGTAACCTGAAAATACACTCAAAGCAGCAAACGAACTACGCCGGTGGCACCATTTATTGAGCAAAGGTTTTCAAGTTAGGAACTTGGCCACAAATTCCTCATT
CTTAGATATTAGTAGCAGTAGCTTTTGTGTATTTGTGTTACTTTCAAATGGGTTGGAAGGCTGCTCAGAAGCTTATTAGGCATTGGAAAATTCTTAGAGGAGATAATGTC
ATGATCATTAGAGGCAAGGATAAAGGAGAAACTGGTTTGGTTAAGCGTGTGATTCGCACCCAAAACCGTGTTATTGTCGAGGGTAAAAACCTGGTGAAGAAACATATTAA
ACAAGGACAAGGTCATGAAGGTGGAATCTTTACGGTTGAAGCTCCTCTTCATGTATCCAATGTTCAAGTTGTTGATCCTGCAACAGGGAAACCTGTTAAGGTTGGTACTA
GATATCTTGAAGATGGTTCTAAAGTGCGAGTTTCAAGAGGAATTGGAGCCTCAGGTTCAATAATCCCTCGTCCAGAGATCTTAAAGATAAGGACTACACCCAGACCTACA
GTTGCTGGTCCCAAGGATACTTCAATGGATGTGGTGCTAGAGAAAACTTATGATGCTAAAATAGGGAAGGGCATGCCTGACCTTTAGAAGTTTCTTCAATTCAATTCAGA
AGACATGCTACTATTAGGTTGGAATATATCCAGAACCTGATGATGCATCCTTTATTGTAGTTGGTGGAAACTTGTATTTCATTTCTTCTTTTTGTTGGAGAAAGCATTTC
CTTGTTTGTTTTTGTACTTCAATTCATGCATGCTTATGAAGAAACAACTCTGATCCTTTGATGGTTATGAGAAAAAGGATATAATTTTGTACTAAATTTTTTGGTGTTAG
ATTTACGAGTCAATATGTTTGCTCTTTCTCA
Protein sequenceShow/hide protein sequence
MGWKAAQKLIRHWKILRGDNVMIIRGKDKGETGLVKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPATGKPVKVGTRYLEDGSKVRVSRGIG
ASGSIIPRPEILKIRTTPRPTVAGPKDTSMDVVLEKTYDAKIGKGMPDL