; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0017828 (gene) of Chayote v1 genome

Gene IDSed0017828
OrganismSechium edule (Chayote v1)
DescriptionBED-type domain-containing protein
Genome locationLG10:16930025..16931578
RNA-Seq ExpressionSed0017828
SyntenySed0017828
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7145131.1 hypothetical protein RHSIM_Rhsim04G0149600 [Rhododendron simsii]6.6e-4951.61Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        ++ + S  +RF+Y P PHT E+L D LL C++DWNID K+S++T+DNCSTND M+++L  KL+S +L+L G LFHMRCCAHILNLIVKDG+ VI  GIEK
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISNTAAEFEELPNSSPQRSVQR
        IRD++ ++T SPKR+E F+E   QL ++ TKKLGLDC TRWNSTY+ML  +   +       +++S   A++  LP+   +   +R
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISNTAAEFEELPNSSPQRSVQR

RZB80387.1 putative AC transposase, partial [Glycine soja]1.7e-4963.09Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+ + S  +RF+Y P PHT E LSD L+EC++DWNID KLST+T+DNCSTND MVE +  +L+  +LL  G+L HMRCCAHILNLIVKDG+ V+ DG+E+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ F+T +PKRKE F+  A QL+ISCTKKL LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

RZB80688.1 putative AC transposase, partial [Glycine soja]1.7e-4963.09Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+ + S  +RF+Y P PHT E LSD L+EC++DWNID KLST+T+DNCSTND MVE +  +L+  +LL  G+L HMRCCAHILNLIVKDG+ V+ DG+E+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ F+T +PKRKE F+  A QL+ISCTKKL LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

RZC31300.1 putative AC transposase [Glycine soja]1.7e-4963.09Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+ + S  +RF+Y P PHT E LSD L+EC++DWNID KLST+T+DNCSTND MVE +  +L+  +LL  G+L HMRCCAHILNLIVKDG+ V+ DG+E+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ F+T +PKRKE F+  A QL+ISCTKKL LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

XP_024964422.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cynara cardunculus var. scolymus]6.6e-4961.49Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+N+ S  +RF+Y P PHT E+L+D L +C+LDWN+D KLSTLT+DNC+TND ++ ILL KL   +L++ G LFHMRCCAH+LNLI++DG+ V+ DGIE+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML
        IRD++ F+T SPKR + F+EAA QL+IS TKKL LDC TRWNSTY+M+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML

TrEMBL top hitse value%identityAlignment
A0A151TAS9 Putative AC transposase7.9e-4861.07Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+N+ S  +RF+Y P PH+ + L + L++C++DWNID KLST+T+DNCSTND M+E +  KL+  TLL  GSLFHM CCAHILNLIVKDG+ V+ DG+EK
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ ++TT+PKRKENF+E A QL+I   K L LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

A0A445I2U2 Putative AC transposase (Fragment)8.4e-5063.09Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+ + S  +RF+Y P PHT E LSD L+EC++DWNID KLST+T+DNCSTND MVE +  +L+  +LL  G+L HMRCCAHILNLIVKDG+ V+ DG+E+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ F+T +PKRKE F+  A QL+ISCTKKL LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

A0A445I3K4 Putative AC transposase (Fragment)8.4e-5063.09Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+ + S  +RF+Y P PHT E LSD L+EC++DWNID KLST+T+DNCSTND MVE +  +L+  +LL  G+L HMRCCAHILNLIVKDG+ V+ DG+E+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ F+T +PKRKE F+  A QL+ISCTKKL LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

A0A445M1H3 Putative AC transposase6.0e-4861.74Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        ++ + S  +RF+Y P PHT E L +AL+EC+LDWNID KLST+T+DNCSTND M+E +  KL+  TL+  G+ FHMRCCAHILNLIVKDG+ V+ DG+EK
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ ++  +PKR E F E A QL+I CTKKL LDC TRWNSTY MLD
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

A0A445M6V6 Putative AC transposase8.4e-5063.09Show/hide
Query:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK
        N+ + S  +RF+Y P PHT E LSD L+EC++DWNID KLST+T+DNCSTND MVE +  +L+  +LL  G+L HMRCCAHILNLIVKDG+ V+ DG+E+
Subjt:  NFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEK

Query:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD
        IRD++ F+T +PKRKE F+  A QL+ISCTKKL LDC TRWNSTY ML+
Subjt:  IRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLD

SwissProt top hitse value%identityAlignment
B9FJG3 Zinc finger BED domain-containing protein RICESLEEPER 11.4e-2241.55Show/hide
Query:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDN-CSTNDLMVEILLTKLESR-TLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH
        + F+    PH+   LS+A+   + DWN+  KL T+T+DN CS++D+    L   L ++  L+L G LF +RC AHILN + +D +  I   I  IR+++ 
Subjt:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDN-CSTNDLMVEILLTKLESR-TLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH

Query:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML
        F   SP  +E F E A QL+I  TK L LD  T+WN+TY+ML
Subjt:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML

P03010 Putative AC9 transposase2.2e-2337.27Show/hide
Query:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLE--SRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH
        + F +    HTG+ LS      M+ WNI+ KL  L++DN S N++ V  ++  L+     L+  G+ FH+RC  HILNL+ KDG+ VI+  IEKI+  + 
Subjt:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLE--SRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH

Query:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISN
           +SP + E   + A +  +  +K +  D  TRWNSTY+ML ++  L  KP    LK S+
Subjt:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISN

P08770 Putative AC transposase2.2e-2337.27Show/hide
Query:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLE--SRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH
        + F +    HTG+ LS      M+ WNI+ KL  L++DN S N++ V  ++  L+     L+  G+ FH+RC  HILNL+ KDG+ VI+  IEKI+  + 
Subjt:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLE--SRTLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH

Query:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISN
           +SP + E   + A +  +  +K +  D  TRWNSTY+ML ++  L  KP    LK S+
Subjt:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISN

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 21.7e-2342.25Show/hide
Query:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDN-CSTNDLMVEILLTKLESR-TLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH
        + F+    PH+   LS+A+   + DWN+  KL T+T+DN CS++D+    L   L ++  L+L G LF +RC AHILN + +D +  I   I  IR+++ 
Subjt:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDN-CSTNDLMVEILLTKLESR-TLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTLH

Query:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML
        F   SP R+E F E A QL+I  TK L LD  T+WN+TY+ML
Subjt:  FFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 34.3e-1935.66Show/hide
Query:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDN-CSTNDLMVEILLTKLESR--TLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTL
        + F+    PH+   LS+A+   + DWN+  KL T+T+DN  S++D+    ++  L ++   +++ G LF +RC AHILN + +D +  +   I  IR+++
Subjt:  IRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDN-CSTNDLMVEILLTKLESR--TLLLHGSLFHMRCCAHILNLIVKDGMTVISDGIEKIRDTL

Query:  HFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML
         F   S   ++ F E A QL+I   K L LD  T+WN+TY+ML
Subjt:  HFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVML

Arabidopsis top hitse value%identityAlignment
AT3G42170.1 BED zinc finger ;hAT family dimerisation domain1.5e-1429.24Show/hide
Query:  MSYVFSVHHNLFIYKFNFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILN
        + YVF   H +     ++ I    +  +   +P   E LS A+  C+ +W ++ KL  +T ++ ++N  +  I          +L G L    C A    
Subjt:  MSYVFSVHHNLFIYKFNFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILN

Query:  LIVKDGMTVISDGIEKIRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELR
         + KD +    D I+ IRD++    TS   +E F E   QLQ+   K L LD  T+WN+TY+ML  + EL+
Subjt:  LIVKDGMTVISDGIEKIRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTATGTATTTTCTGTTCATCATAATTTATTTATATATAAGTTCAATTTTAATATAGTATCACTTTATATTAGGTTTGTATACGCGCCACATCCACATACTGGAGA
ATTACTTTCTGATGCATTATTAGAGTGTATGTTGGATTGGAATATAGACCACAAATTATCAACGTTAACTATGGATAATTGTTCGACAAATGATTTAATGGTTGAGATTT
TACTAACAAAGTTAGAGTCTAGGACATTGTTGTTGCATGGTAGTTTGTTTCACATGCGCTGTTGTGCACATATTTTAAACTTGATAGTAAAAGATGGAATGACTGTGATT
AGTGATGGTATAGAGAAAATTAGAGATACATTACATTTTTTTACTACATCTCCTAAAAGGAAGGAAAATTTTGATGAAGCTGCAGGTCAATTGCAAATTTCGTGCACTAA
AAAACTTGGGCTTGATTGTGTGACAAGATGGAATTCAACATATGTGATGCTTGATAACTCTCAAGAATTGAGAGTTAAACCAACCAAGTGTGCCTTGAAGATATCCAACA
CAGCAGCAGAATTTGAAGAATTGCCAAACAGTTCGCCACAGCGAAGTGTTCAGCGAACGAAGATGCTGTGA
mRNA sequenceShow/hide mRNA sequence
GCAACTATCGAGTGTTCTTATCAACTCCAATGGGAGGAGATTCAAGGAACGGGACAACACATTTACATGATTATTTTAAAATATGCCCATTGATGAAACAAAGAGATATT
AGACAATCATGTTTGAGACCAAACAAAATCAATGATTGAAAGGTTGTGATTATAAATTATAGTTTTGATTATGATGCTTTAAGAAGAGATCTTGCTACAATGATAATTTT
ACACGAGTATCCTATTAACATGGTTGAACACAAAGGATTTAGAAATTTTATGAGTGGTATTCAACCTTTGTTTAAAATGGTTTCAAGAACCACAATGAGAAAAGACATCA
TAAAAAATTTATGAAGAAGAGAAAATTAAAATGAAGCTTTTGGATAAGAACCAAAGTAGAGTTGTCATTACTATTGATATGTGGACAGCTAGTATCCCAAAGAAAGGATA
CATGGCAATAATTGCACATTGACGACTCTTGGGTGCAGAGCAGACTTTTGAGGTAATTTAAATGTCTTATGTATTTTCTGTTCATCATAATTTATTTATATATAAGTTCA
ATTTTAATATAGTATCACTTTATATTAGGTTTGTATACGCGCCACATCCACATACTGGAGAATTACTTTCTGATGCATTATTAGAGTGTATGTTGGATTGGAATATAGAC
CACAAATTATCAACGTTAACTATGGATAATTGTTCGACAAATGATTTAATGGTTGAGATTTTACTAACAAAGTTAGAGTCTAGGACATTGTTGTTGCATGGTAGTTTGTT
TCACATGCGCTGTTGTGCACATATTTTAAACTTGATAGTAAAAGATGGAATGACTGTGATTAGTGATGGTATAGAGAAAATTAGAGATACATTACATTTTTTTACTACAT
CTCCTAAAAGGAAGGAAAATTTTGATGAAGCTGCAGGTCAATTGCAAATTTCGTGCACTAAAAAACTTGGGCTTGATTGTGTGACAAGATGGAATTCAACATATGTGATG
CTTGATAACTCTCAAGAATTGAGAGTTAAACCAACCAAGTGTGCCTTGAAGATATCCAACACAGCAGCAGAATTTGAAGAATTGCCAAACAGTTCGCCACAGCGAAGTGT
TCAGCGAACGAAGATGCTGTGAAGATAGCGAAGACAAAGATGCTCTGACAACCTACAATGTGGATCGTGGAGCAGAAATGTCAGAATAAAGGAGTCCTTCCACTGAAAAG
TGATCGGAGAGCAACCTAGACATTGTCAGGATCATGGAGCAGGCTTTGTCGCTTGGAGCTGGAGTATAAATAAATGTCTTCTCCTTTAGAGCAATTCATCACCCACTTTT
GGGCCAATCCCCCGTCCTAGGGTCGATCATATTTCCTTAGAGAGTTTTCCGTCGAGCTTATTCCGATCAACATTTCTTAGCTTAGCCAT
Protein sequenceShow/hide protein sequence
MSYVFSVHHNLFIYKFNFNIVSLYIRFVYAPHPHTGELLSDALLECMLDWNIDHKLSTLTMDNCSTNDLMVEILLTKLESRTLLLHGSLFHMRCCAHILNLIVKDGMTVI
SDGIEKIRDTLHFFTTSPKRKENFDEAAGQLQISCTKKLGLDCVTRWNSTYVMLDNSQELRVKPTKCALKISNTAAEFEELPNSSPQRSVQRTKML