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Sed0017850 (gene) of Chayote v1 genome

Gene IDSed0017850
OrganismSechium edule (Chayote v1)
DescriptionCYSTM domain-containing protein
Genome locationLG05:32031162..32032248
RNA-Seq ExpressionSed0017850
SyntenySed0017850
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR028144 - Cysteine-rich transmembrane CYSTM domain
IPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589304.1 hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sororia]4.3e-3179.07Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQ--TNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY HQ++ M YP PPPSYPA E+  KE NSGPYVAAPPPVGYPVRD  QYPHQ  T QT+SKGDGFWKGC AALCCCWVLDCVF
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQ--TNQTRSKGDGFWKGCCAALCCCWVLDCVF

XP_008447127.1 PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo]3.9e-3278.16Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY +QE+ MGYP PPPSY A EQ  KE  SGPYVAAPPPVGYPVRD  QYPHQTN   QT+S+GDGFWKGCCAALCCCWVLDC+F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF

XP_011659032.1 cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]1.3e-3279.31Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY +QE+SMGYP PPPSY A EQ  KE  SGPYVAAPPPVGYPVRD  QYPHQTN   QT+S+GDGFWKGCCAALCCCWVLDC+F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF

XP_023530417.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo]1.3e-3077.91Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQ--TNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY HQ++ M YP PPPSYPA E+  KE NSGPYVAAPPPVGYPVR+  QYPHQ  T QT+SKGDGFWKGC AALCCCWVLDCVF
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQ--TNQTRSKGDGFWKGCCAALCCCWVLDCVF

XP_038888289.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida]1.6e-3075Show/hide
Query:  MSQYSHQEMSMGYPV-PPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY  QE+ MGYP  PPPSYPA  Q ++  ++GPYVAAPPPVGYPVRD  QYPHQTN   QT+S+GDGFWKGCCAALCCCWVLDCVF
Subjt:  MSQYSHQEMSMGYPV-PPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF

TrEMBL top hitse value%identityAlignment
A0A0A0K5N8 CYSTM domain-containing protein6.5e-3379.31Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY +QE+SMGYP PPPSY A EQ  KE  SGPYVAAPPPVGYPVRD  QYPHQTN   QT+S+GDGFWKGCCAALCCCWVLDC+F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF

A0A1S3BHK1 cysteine-rich and transmembrane domain-containing protein A-like1.9e-3278.16Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY +QE+ MGYP PPPSY A EQ  KE  SGPYVAAPPPVGYPVRD  QYPHQTN   QT+S+GDGFWKGCCAALCCCWVLDC+F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF

A0A5A7USJ3 Cysteine-rich and transmembrane domain-containing protein A-like1.9e-3278.16Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY +QE+ MGYP PPPSY A EQ  KE  SGPYVAAPPPVGYPVRD  QYPHQTN   QT+S+GDGFWKGCCAALCCCWVLDC+F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTN---QTRSKGDGFWKGCCAALCCCWVLDCVF

A0A6J1D469 cysteine-rich and transmembrane domain-containing protein B-like1.5e-2975.29Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDA-AQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY  QE+ M YP PPPSYPAAEQ       GPYV APPPVGYPV+DA  +YPHQT+QT+S+GDGFWKGCCAALCCCWVLDCVF
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDA-AQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF

A0A6J1JEV3 cysteine-rich and transmembrane domain-containing protein B-like isoform X21.4e-2781.58Show/hide
Query:  MGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQ--TNQTRSKGDGFWKGCCAALCCCWVLDCVF
        M YP PPPSYPA E+  KE NSGPYVAAPPPVGYPVRD  QYPHQ  T QT+SKGDGFWKGC AALCCCWVLDCVF
Subjt:  MGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQ--TNQTRSKGDGFWKGCCAALCCCWVLDCVF

SwissProt top hitse value%identityAlignment
Q8S8M0 Cysteine-rich and transmembrane domain-containing protein WIH28.0e-0434.69Show/hide
Query:  MSQYSHQEMSM---------GYP---VPPPSYPAAEQGDKEWNSGPY-VAAPPPVGYPVRDAAQY-PHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY+   + +         GYP    PP  YP      + +    Y     P  GYP   A QY P   +Q +    GF +GC AALCCC +LD  F
Subjt:  MSQYSHQEMSM---------GYP---VPPPSYPAAEQGDKEWNSGPY-VAAPPPVGYPVRDAAQY-PHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF

Arabidopsis top hitse value%identityAlignment
AT1G05340.1 unknown protein2.9e-0938.37Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAA--QYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQY H + +   P PP S                 + PPP+GYP    +         +T+SKGDGF+KGC AA+CCC  LD  F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAA--QYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF

AT1G56060.1 unknown protein3.4e-1056.6Show/hide
Query:  YVAAPPPVGYPV--RDAAQYPHQTNQTRSKGD-GFWKGCCAALCCCWVLDCVF
        YV APPP+GYPV  +D+ Q     ++ +SKG  GF +GC AA+CCC VLDCVF
Subjt:  YVAAPPPVGYPV--RDAAQYPHQTNQTRSKGD-GFWKGCCAALCCCWVLDCVF

AT2G32190.1 unknown protein6.7e-1447.62Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQYS  + S  YP PP S            +GPY+  PPP+GYP  D +       +T+SKGDGF KGC AA+CCC VLD  F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF

AT2G32210.1 unknown protein1.2e-1551.19Show/hide
Query:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF
        MSQYS  + S  YP PP S            +GPYV APPP+GYP  D +     T +T+SKGDGF KGC AA+CCC VLD  F
Subjt:  MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF

AT3G22240.1 unknown protein1.3e-1462.5Show/hide
Query:  NSGPYVAAPPPVGYPVRDA--AQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF
        +SGPY  +PPP+GYP RDA     P    +T+SKGDGFWKGCCAA+CCC VLD  F
Subjt:  NSGPYVAAPPPVGYPVRDA--AQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAATATAGCCACCAGGAAATGTCCATGGGTTATCCGGTGCCACCTCCATCGTACCCGGCCGCGGAGCAAGGCGATAAAGAGTGGAATTCGGGGCCTTACGTTGC
AGCGCCGCCCCCGGTTGGATATCCGGTGAGAGACGCTGCACAGTACCCCCATCAAACTAATCAAACTCGATCCAAGGGAGATGGTTTTTGGAAAGGATGCTGTGCTGCCC
TGTGTTGCTGCTGGGTATTGGACTGTGTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATTTGTACTTTGCAATATTATCAAAACTTTATTATTCCTTGAGAACATGAGCCAATATAGCCACCAGGAAATGTCCATGGGTTATCCGGTGCCACCTCCATCGTACCCGG
CCGCGGAGCAAGGCGATAAAGAGTGGAATTCGGGGCCTTACGTTGCAGCGCCGCCCCCGGTTGGATATCCGGTGAGAGACGCTGCACAGTACCCCCATCAAACTAATCAA
ACTCGATCCAAGGGAGATGGTTTTTGGAAAGGATGCTGTGCTGCCCTGTGTTGCTGCTGGGTATTGGACTGTGTCTTCTAGAATGCTGGCTACCTACCTACCTTATTGCT
GGAGACTTGGAGATAACACATTTATTTATTCATTCATTTTATTTTATTTTACTATACCCCTATTTTCATAATTATTATTAGTATTATGTACTTGTCTTTTGGGATTTTAC
CTTTCTGTATTTGTGCTAGGTTTTAGCTTTGGACTTTTTCATCCATGTATGATGGCCATTTTTTTTGTTAATAAATAAAGTTAGTTCTCTAGTTATTTGCTCC
Protein sequenceShow/hide protein sequence
MSQYSHQEMSMGYPVPPPSYPAAEQGDKEWNSGPYVAAPPPVGYPVRDAAQYPHQTNQTRSKGDGFWKGCCAALCCCWVLDCVF