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Sed0017888 (gene) of Chayote v1 genome

Gene IDSed0017888
OrganismSechium edule (Chayote v1)
DescriptionCalcium-binding EF-hand
Genome locationLG10:27378594..27379175
RNA-Seq ExpressionSed0017888
SyntenySed0017888
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060899.1 putative Calcium-binding EF-hand family protein [Cucumis melo var. makuwa]1.2e-3178.02Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL
        MGN+KS  YKR LVPF++EQLA+VFK+HDRDGDG LTKEELKQAF+YLGS FS+ RV+EALRAAD NGDG ISMDEM +LIKY KTRKYT+
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL

KAG6585663.1 hypothetical protein SDJN03_18396, partial [Cucurbita argyrosperma subsp. sororia]9.6e-3284.71Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTK
        MGNAKST YKR LVPFT+EQLA +FKSHDRDGDG+L+KEELKQAF YLGS FSS RVKEALRAAD NGDGFISMDEM +LIKYTK
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTK

KAG6598376.1 hypothetical protein SDJN03_08154, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2975.82Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL
        MGN+KS  YKR LVPF++EQLA VFK+HD DGDG+LTKEELKQAF YLGS FSS RV+EALRAAD +GDGFISM EM +LI+Y K+RKYTL
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL

KAG7020566.1 hypothetical protein SDJN02_17252, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-3284.71Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTK
        MGNAKST YKR LVPFT+EQLA +FKSHDRDGDG+L+KEELKQAF YLGS FSS RVKEALRAAD NGDGFISMDEM +LIKYTK
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTK

KAG7020569.1 hypothetical protein SDJN02_17255, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-3484.62Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL
        MGNAKST YKR LVPFT+EQLA +FKSHDRDGDG+L+KEELKQAF YLGS FSS RVKEALRAAD NGDGFISMDEM +LIKYTK RKYTL
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL

TrEMBL top hitse value%identityAlignment
A0A0A0LRB6 Uncharacterized protein2.3e-3176.92Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL
        MGN+KS  YKR LVPF++EQLA+VFK+HDRDGDG LTKEELKQAF+YLGS F + RV+EALRAAD NGDG ISMDEM +LIKY KTRKYT+
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL

A0A2N9FYQ0 Uncharacterized protein1.1e-1748.86Show/hide
Query:  KSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTLG
        K   +KR  +PFT+EQL ++FKSHD DGDG+L+++E+K+AFKYLGS + + R  +A+  ADA+ DG+I  +E+K+L++Y     YT+G
Subjt:  KSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTLG

A0A5A7V5B0 Putative Calcium-binding EF-hand family protein6.0e-3278.02Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL
        MGN+KS  YKR LVPF++EQLA+VFK+HDRDGDG LTKEELKQAF+YLGS FS+ RV+EALRAAD NGDG ISMDEM +LIKY KTRKYT+
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL

A0A5A7VBH2 Calcium-binding EF-hand6.1e-1650.6Show/hide
Query:  YKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL
        YKR  VPF+ +QL D+F  HD DGDG+L++ ELK AF  LGSN+S  R +++L+AADA+GDG++++DE+  L+ Y   R+Y +
Subjt:  YKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTL

A0A7N2KRS3 Uncharacterized protein5.9e-1953.41Show/hide
Query:  KSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTLG
        K+  +KR  VPF ++QL ++FKSHD DGDG+L+++ELK AFKYLGS + + R  +ALR ADAN DG+I+ DE+K+L++Y     YT+G
Subjt:  KSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTLG

SwissProt top hitse value%identityAlignment
P24044 Calmodulin8.5e-0736.92Show/hide
Query:  TDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        T+E+L + F+  DRDGDG ++ +EL+     LG   ++  V E +R AD +GDG I+ +E  +++
Subjt:  TDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI

P27166 Calmodulin1.9e-0636.92Show/hide
Query:  TDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        T+E+L + FK  DRDG+G ++  EL+     LG   +   V E +R AD +GDG I+ +E  +++
Subjt:  TDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI

P62203 Calmodulin8.5e-0736.92Show/hide
Query:  TDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        T+E+L + F+  DRDGDG ++ +EL+     LG   ++  V E +R AD +GDG I+ +E  +++
Subjt:  TDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI

Q0DZP5 Probable calcium-binding protein CML171.1e-0642.62Show/hide
Query:  QLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQL
        +L  VF+  DRDGDG++T+EEL ++ + LG       +   +   DANGDG + MDE  QL
Subjt:  QLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQL

Q8RZB5 Probable calcium-binding protein CML101.9e-0637.88Show/hide
Query:  PFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQL
        P  +E++  VF+  D +GDG++++ EL   F+ LG   +   +   +  ADA+GDGFIS+DE   L
Subjt:  PFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQL

Arabidopsis top hitse value%identityAlignment
AT1G18530.1 EF hand calcium-binding protein family2.3e-0738.24Show/hide
Query:  VPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        V    EQL ++FKS DRDG+G ++  EL  A   +G   +   + E ++ AD NGDG IS  E   ++
Subjt:  VPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI

AT1G73630.1 EF hand calcium-binding protein family3.9e-0729.27Show/hide
Query:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIK
        M N       ++  P TD +L  VF   D +GDG+++  EL   FK +G++++   +   L   D + DGFI+ +E   + +
Subjt:  MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIK

AT3G03000.1 EF hand calcium-binding protein family2.3e-0737.31Show/hide
Query:  PFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        P+TD+QL  +F+  DRDG+G +T  EL  +   LG   ++  +   ++ AD +GDG I   E  Q I
Subjt:  PFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI

AT3G25600.1 Calcium-binding EF-hand family protein1.7e-0738.24Show/hide
Query:  VPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        V    EQL +VF+S DRDG+G +T  EL  +   +G   +   + E +  AD+NGDG IS +E   ++
Subjt:  VPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI

AT3G51920.1 calmodulin 95.1e-0734.92Show/hide
Query:  EQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI
        ++L +VF+  DRDGDG +++ EL +  K +G   ++   +  +R AD +GDGF+S  E  +++
Subjt:  EQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGCCAAAAGTACACGTTACAAACGAGCTTTGGTTCCATTCACAGATGAGCAACTCGCCGACGTTTTCAAGAGCCATGACCGCGACGGTGACGGGCAGCTAAC
AAAGGAGGAGTTGAAGCAAGCCTTCAAATATCTTGGCTCCAACTTTAGCTCCTCTAGGGTCAAAGAAGCCCTACGTGCTGCTGATGCGAACGGCGACGGCTTCATCAGCA
TGGACGAGATGAAACAGCTTATTAAGTATACCAAAACTCGTAAATACACTCTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
CAAAAAACTCATTCCCATTCCTCGTTTATCCTAATTGTCTTCTTCTTTTTCAATGGGAAATGCCAAAAGTACACGTTACAAACGAGCTTTGGTTCCATTCACAGATGAGC
AACTCGCCGACGTTTTCAAGAGCCATGACCGCGACGGTGACGGGCAGCTAACAAAGGAGGAGTTGAAGCAAGCCTTCAAATATCTTGGCTCCAACTTTAGCTCCTCTAGG
GTCAAAGAAGCCCTACGTGCTGCTGATGCGAACGGCGACGGCTTCATCAGCATGGACGAGATGAAACAGCTTATTAAGTATACCAAAACTCGTAAATACACTCTTGGTTA
AAGTTGCCAACAATACTTGCTTATTTTTCGAGGGGTAGATATTTAATAAGGAGAGCGAAAGTACTATTTGGATACATCATAAACAATGTTCTCTCTTTAATGGTAAAGAT
TGAATTCTGGGGTATGAAGATTGTTTTGCTCCCGGGTTCAACCTATGTATTTTTCTTAAACTTCATATATGTTGTTTTCTCCAACTACGTTATTTCTTGTTTGCGGTTCA
TGTATGTGCTAATATAAGTTTTTTCTTTTTTC
Protein sequenceShow/hide protein sequence
MGNAKSTRYKRALVPFTDEQLADVFKSHDRDGDGQLTKEELKQAFKYLGSNFSSSRVKEALRAADANGDGFISMDEMKQLIKYTKTRKYTLG