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Sed0017892 (gene) of Chayote v1 genome

Gene IDSed0017892
OrganismSechium edule (Chayote v1)
DescriptionF-box protein
Genome locationLG08:5720407..5721217
RNA-Seq ExpressionSed0017892
SyntenySed0017892
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9602715.1 hypothetical protein IFM89_030603 [Coptis chinensis]1.3e-0856.14Show/hide
Query:  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDAL
        ++NL E+++  ILS LP K LL+FKSVCKSWYSLINDP FI+ H  HA+++ + +A+
Subjt:  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDAL

XP_011652842.1 F-box protein CPR1-like [Cucumis sativus]7.4e-0964Show/hide
Query:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        +  DV+I ILS LP +SLLRFKSVCK+WY+LINDPKF+ KH   +S H+H
Subjt:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

XP_022935692.1 F-box protein CPR30-like [Cucurbita moschata]1.6e-0861.82Show/hide
Query:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        A + +L E+VMIEILS LP +SLLRFK+V KSWY+LIN+PKF  KHFS++ + +H
Subjt:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

XP_022983805.1 F-box protein CPR1-like [Cucurbita maxima]7.4e-0961.82Show/hide
Query:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        A + +L E+VMIEILS LP +SLLRFK+V KSWY+LI++PKF  KHFS++ +H+H
Subjt:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

XP_038906036.1 F-box protein CPR1-like [Benincasa hispida]1.5e-0968.52Show/hide
Query:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQ
        A + NL E+VMIEILS LP +SLLRFK V KSWY+LINDPKF  KHFS++ QH+
Subjt:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQ

TrEMBL top hitse value%identityAlignment
A0A2Z7AC90 F-box domain-containing protein8.0e-0955.17Show/hide
Query:  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAK
        NL+EDV++EILS LP KSL+RF+ VCKSWY L+ DP FI KH+ + S  + +  L  K
Subjt:  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAK

A0A5D3DPH7 F-box protein CPR30-like8.0e-0964Show/hide
Query:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        +  DV+I+ILS LP +SLLRFKSVCKSWY LINDPKF+ KH   +  H+H
Subjt:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

A0A5D3DPY4 F-box protein CPR30-like8.0e-0963.64Show/hide
Query:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        A + NL + V+IEILS LP +SLLRFK V KSWY+L NDPKF  KHFS + QH+H
Subjt:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

A0A6J1F6B1 F-box protein CPR30-like8.0e-0961.82Show/hide
Query:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        A + +L E+VMIEILS LP +SLLRFK+V KSWY+LIN+PKF  KHFS++ + +H
Subjt:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

A0A6J1J6Y5 F-box protein CPR1-like3.6e-0961.82Show/hide
Query:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH
        A + +L E+VMIEILS LP +SLLRFK+V KSWY+LI++PKF  KHFS++ +H+H
Subjt:  AVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQH

SwissProt top hitse value%identityAlignment
Q9CAE7 Putative F-box protein At3g104303.6e-0650Show/hide
Query:  ANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLI-NDPKFIRKHFSHASQ
        ++L  D+++EIL   PA+SLLRFKS CK WY LI ND +F+ KH   +++
Subjt:  ANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLI-NDPKFIRKHFSHASQ

Q9LUP5 F-box/kelch-repeat protein At3g175307.2e-0746.94Show/hide
Query:  VVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA
        ++++L  D+  EILS +PAKSL ++K+ CK WY+L  DP F++K+F  A
Subjt:  VVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA

Q9LUP9 Putative F-box protein At3g174801.2e-0644.07Show/hide
Query:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIR
        L ED++ +ILS +PA SL+R +S CK W +++ND +FI+KHF  A + ++ D L   +R
Subjt:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIR

Q9LUU4 Putative F-box protein At3g172709.4e-0740.74Show/hide
Query:  MAAVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQ
        M   + NL +++  EILS +PAKSL ++K++CK WY+L  DP+F++K+   +++
Subjt:  MAAVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQ

Q9SAB5 Putative F-box/LRR-repeat/kelch-repeat protein At1g116205.5e-0744.23Show/hide
Query:  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHE
        +L+ D++ EILS +PA+SL+R +S CK W +LI +P+F+ KH SH    + +
Subjt:  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHE

Arabidopsis top hitse value%identityAlignment
AT1G11620.1 F-box and associated interaction domains-containing protein3.9e-0844.23Show/hide
Query:  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHE
        +L+ D++ EILS +PA+SL+R +S CK W +LI +P+F+ KH SH    + +
Subjt:  NLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHE

AT2G41473.1 F-box family protein3.5e-0958.33Show/hide
Query:  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA
        +A LA D++IEIL+ +P K LLRF+ VCKSW SL  D +FIR H +HA
Subjt:  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA

AT3G17270.1 F-box family protein8.7e-0842Show/hide
Query:  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQ
        + NL +++  EILS +PAKSL ++K++CK WY+L  DP+F++K+   +++
Subjt:  VANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQ

AT3G17480.1 F-box and associated interaction domains-containing protein8.7e-0844.07Show/hide
Query:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIR
        L ED++ +ILS +PA SL+R +S CK W +++ND +FI+KHF  A + ++ D L   +R
Subjt:  LAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIR

AT3G17530.1 F-box and associated interaction domains-containing protein5.1e-0846.94Show/hide
Query:  VVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA
        ++++L  D+  EILS +PAKSL ++K+ CK WY+L  DP F++K+F  A
Subjt:  VVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTGTCGTTGCAAATTTGGCGGAAGATGTGATGATCGAGATTTTATCGATGCTCCCGGCAAAGTCTCTGCTCCGATTCAAATCCGTTTGCAAATCCTGGTACTC
TCTAATTAACGATCCTAAATTCATAAGAAAACATTTCTCTCATGCTTCTCAACACCAACACGAAGATGCACTGAAAGCGAAAATACGATGTACACACATTAAACATTTGG
GAAATGTACAAAGATAA
mRNA sequenceShow/hide mRNA sequence
TTGAGAAACCCTAAAAGAAAACCTCACAACTCTCAAATGGCGGCTGTCGTTGCAAATTTGGCGGAAGATGTGATGATCGAGATTTTATCGATGCTCCCGGCAAAGTCTCT
GCTCCGATTCAAATCCGTTTGCAAATCCTGGTACTCTCTAATTAACGATCCTAAATTCATAAGAAAACATTTCTCTCATGCTTCTCAACACCAACACGAAGATGCACTGA
AAGCGAAAATACGATGTACACACATTAAACATTTGGGAAATGTACAAAGATAATGAATCTGGGGGATTTTCATGGTCAAGGCTATTTACCATTAATGATACTGTTTTTTA
AATCAGCCAGCCATTGTTGTTTGTGAACTCCGATGAACTTCTAATAGAAGTTGAGGACGGATCAGATTTTGGGGGACTTTTTATGGAATCGAATGAAAGACGAGTGATGG
ATGAATCCGTAGAACCTAAAGAAGAACTACTTATTCTGTACAATATTAAGACTCAACACTTCAAACCGCTTTCAGTGAAAGGAGATCCATCAATGTTCCAAGCTACTTTC
TTTGTTAAGAGTTTGATTTCGGTTCAAGGAGGAACCATGGATTTTAGTATTAATTAAGGCCTCCTTTAATAATCATTTTGTTTTCGTTTCTTGTTTATGAAATTTAAGTC
TACGACAACTACCTTATTATACTTTGTTCCTTATTTGGATATTTACCTCTTATCTATACTTTAATAAACGAAATCAAAATTTGGAAACAAAAAAAATAGCTTCTTCACCT
ACTTTCTTAAGGAATATGGATACATTGTAGGAAAGATGGAG
Protein sequenceShow/hide protein sequence
MAAVVANLAEDVMIEILSMLPAKSLLRFKSVCKSWYSLINDPKFIRKHFSHASQHQHEDALKAKIRCTHIKHLGNVQR