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Sed0017946 (gene) of Chayote v1 genome

Gene IDSed0017946
OrganismSechium edule (Chayote v1)
Descriptionprotein MODIFIER OF SNC1 11-like isoform X1
Genome locationLG04:27392882..27394833
RNA-Seq ExpressionSed0017946
SyntenySed0017946
Gene Ontology termsGO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR040746 - THO1_MOS11, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580577.1 WRKY transcription factor 44, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2962.4Show/hide
Query:  KFRAGPDLPSSMATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRS-----SSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRA
        K   GPDLPSSMATDFT  LS+N LPGPK  LP + GS  AGNG+ D+ Q+ RS     S     + +KEG +SQRA +G   E HHASVFDIFKKI RA
Subjt:  KFRAGPDLPSSMATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRS-----SSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRA

Query:  ERFGIPVQLSEAEKRFSRAESLWIE
        ERFGIPV+LSEAEKRFSRAE   I+
Subjt:  ERFGIPVQLSEAEKRFSRAESLWIE

XP_008442609.1 PREDICTED: protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo]1.9e-2565.14Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF
        MATDF   LS+N LPGPK TLP D G T AGNG  D+ Q+  SS+      +KEGI+SQ +AVG +PE+ HASVFDIFKKI RAERFGIPV+LSEAEKRF
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF

Query:  SRAESLWIE
        SRAE   I+
Subjt:  SRAESLWIE

XP_008442610.1 PREDICTED: uncharacterized protein LOC103486433 isoform X2 [Cucumis melo]1.9e-2565.14Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF
        MATDF   LS+N LPGPK TLP D G T AGNG  D+ Q+  SS+      +KEGI+SQ +AVG +PE+ HASVFDIFKKI RAERFGIPV+LSEAEKRF
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF

Query:  SRAESLWIE
        SRAE   I+
Subjt:  SRAESLWIE

XP_022145709.1 uncharacterized protein LOC111015100 isoform X2 [Momordica charantia]3.3e-2567.27Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE
        MATD TA LS+N    PKP LP DSG  +AGN   DR QD RSS     S    S +KEG+DSQRAAVG +PE +HASVFDIFKKI RAERFGIPV+LSE
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE

Query:  AEKRFSRAES
        AEKR+SRAES
Subjt:  AEKRFSRAES

XP_022145710.1 uncharacterized protein LOC111015100 isoform X3 [Momordica charantia]5.6e-2565.49Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE
        MATD TA LS+N    PKP LP DSG  +AGN   DR QD RSS     S    S +KEG+DSQRAAVG +PE +HASVFDIFKKI RAERFGIPV+LSE
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE

Query:  AEKRFSRAESLWI
        AEKR+SRAE   I
Subjt:  AEKRFSRAESLWI

TrEMBL top hitse value%identityAlignment
A0A1S3B640 protein MODIFIER OF SNC1 11-like isoform X19.4e-2665.14Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF
        MATDF   LS+N LPGPK TLP D G T AGNG  D+ Q+  SS+      +KEGI+SQ +AVG +PE+ HASVFDIFKKI RAERFGIPV+LSEAEKRF
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF

Query:  SRAESLWIE
        SRAE   I+
Subjt:  SRAESLWIE

A0A1S3B6R5 uncharacterized protein LOC103486433 isoform X29.4e-2665.14Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF
        MATDF   LS+N LPGPK TLP D G T AGNG  D+ Q+  SS+      +KEGI+SQ +AVG +PE+ HASVFDIFKKI RAERFGIPV+LSEAEKRF
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF

Query:  SRAESLWIE
        SRAE   I+
Subjt:  SRAESLWIE

A0A5D3DNB7 Protein MODIFIER OF SNC1 11-like isoform X19.4e-2665.14Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF
        MATDF   LS+N LPGPK TLP D G T AGNG  D+ Q+  SS+      +KEGI+SQ +AVG +PE+ HASVFDIFKKI RAERFGIPV+LSEAEKRF
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRF

Query:  SRAESLWIE
        SRAE   I+
Subjt:  SRAESLWIE

A0A6J1CV89 uncharacterized protein LOC111015100 isoform X32.7e-2565.49Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE
        MATD TA LS+N    PKP LP DSG  +AGN   DR QD RSS     S    S +KEG+DSQRAAVG +PE +HASVFDIFKKI RAERFGIPV+LSE
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE

Query:  AEKRFSRAESLWI
        AEKR+SRAE   I
Subjt:  AEKRFSRAESLWI

A0A6J1CW18 uncharacterized protein LOC111015100 isoform X21.6e-2567.27Show/hide
Query:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE
        MATD TA LS+N    PKP LP DSG  +AGN   DR QD RSS     S    S +KEG+DSQRAAVG +PE +HASVFDIFKKI RAERFGIPV+LSE
Subjt:  MATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSS-----SCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAERFGIPVQLSE

Query:  AEKRFSRAES
        AEKR+SRAES
Subjt:  AEKRFSRAES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G02770.1 unknown protein9.9e-0441.67Show/hide
Query:  RADRRQDHRSSSCTGSSPSKEGIDSQR-AAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRFSRAE
        R D   D      + S   KE  DS    +   +     + V DI KKI RAERFG+ V+L+E EKR SRAE
Subjt:  RADRRQDHRSSSCTGSSPSKEGIDSQR-AAVGILPENHHASVFDIFKKICRAERFGIPVQLSEAEKRFSRAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCGAAAATCTCACCCTCTTTACGTTCTCCATTCTAAATTTCGCGCAGGTCCCGATCTCCCTTCTTCAATGGCGACCGATTTCACAGCAGTGTTGAGCCAAAACAT
TCTTCCAGGACCGAAACCAACACTACCGCCAGATTCAGGATCTACACTCGCCGGTAATGGCAGAGCCGATCGACGGCAAGATCACCGTTCTTCTTCCTGTACCGGATCTT
CTCCTTCAAAGGAAGGCATTGACTCTCAACGCGCCGCCGTTGGGATCTTACCGGAGAATCATCATGCTTCTGTTTTTGATATCTTCAAGAAGATCTGCCGAGCAGAGCGG
TTTGGGATTCCCGTTCAGTTGTCGGAGGCAGAAAAGCGATTCTCTCGCGCTGAGAGTTTGTGGATCGAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAATAAAAACATAAACATATCTTCCAAATGAGAAACGCCGTTATTCCTCCGCCAAAAAAACGAACCGCCAAAAAGTATCTAAAACCGCCAAACCGGCAGGCGT
TGAAAATATAAAAGAGGAGCCAAGAAAATCGGAAATGCATCGAAAATCTCACCCTCTTTACGTTCTCCATTCTAAATTTCGCGCAGGTCCCGATCTCCCTTCTTCAATGG
CGACCGATTTCACAGCAGTGTTGAGCCAAAACATTCTTCCAGGACCGAAACCAACACTACCGCCAGATTCAGGATCTACACTCGCCGGTAATGGCAGAGCCGATCGACGG
CAAGATCACCGTTCTTCTTCCTGTACCGGATCTTCTCCTTCAAAGGAAGGCATTGACTCTCAACGCGCCGCCGTTGGGATCTTACCGGAGAATCATCATGCTTCTGTTTT
TGATATCTTCAAGAAGATCTGCCGAGCAGAGCGGTTTGGGATTCCCGTTCAGTTGTCGGAGGCAGAAAAGCGATTCTCTCGCGCTGAGAGTTTGTGGATCGAATGAAATG
GCCAAAGCTGAGGATCTGAAGAGAAAGGCAAGAGCAGAGAGATTTGAGCTCTTTACTTTGTCCATGGCTACGGACGAGGAGGCAAAGAAGAAAGCTCGGCTAGCCAGATT
CGCTCCATTTTCGTTCAAATTGATTTTCATGGGTGTTCCTGGTTTGCCTCTTTCTCCACATTTGCACACTGAAATCCAGATGCATAACAGGTGCGATGCCTTTTCTTGCG
TCAGCTTGATAGGATGTGATGGCATGAGGATTTTAGCCGTTATTTTCTACAGTACCAGAAGTTTTCTTTTTTGTTTCAATGCTCTTAGTCTTGG
Protein sequenceShow/hide protein sequence
MHRKSHPLYVLHSKFRAGPDLPSSMATDFTAVLSQNILPGPKPTLPPDSGSTLAGNGRADRRQDHRSSSCTGSSPSKEGIDSQRAAVGILPENHHASVFDIFKKICRAER
FGIPVQLSEAEKRFSRAESLWIE