CuGenDBv2

Gene ID	Sed0018004
Organism	Sechium edule (Chayote v1)
Description	Katanin p80 WD40 repeat-containing subunit B1 homolog
Genome location	LG01:17070888..17072454
RNA-Seq Expression	Sed0018004
Synteny	Sed0018004
Gene Ontology terms	GO:0000226 - microtubule cytoskeleton organization (biological process) GO:0015630 - microtubule cytoskeleton (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001680 - WD40 repeat IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008442143.1 PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Cucumis melo]

4.5e-57

61.46

Show/hide

Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

XP_008442151.1 PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Cucumis melo]

4.5e-57

61.46

Show/hide

Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

XP_011653046.2 katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Cucumis sativus]

4.5e-57

61.46

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

XP_011653049.2 katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Cucumis sativus]

4.5e-57

61.46

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

XP_038894611.1 katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X1 [Benincasa hispida]

3.4e-57

61.95

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +EILVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LS94 Katanin p80 WD40 repeat-containing subunit B1 homolog

2.2e-57

61.46

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

A0A1S3B4L6 Katanin p80 WD40 repeat-containing subunit B1 homolog

2.2e-57

61.46

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

A0A1S3B5P1 Katanin p80 WD40 repeat-containing subunit B1 homolog

2.2e-57

61.46

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        KFTPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

A0A5A7UM79 Katanin p80 WD40 repeat-containing subunit B1 homolog

2.8e-57

62.07

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Query:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF
        SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+IKF
Subjt:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF

Query:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK
        TPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDESLK
Subjt:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK

Query:  VRS
        V S
Subjt:  VRS

A0A5D3DSE4 Katanin p80 WD40 repeat-containing subunit B1 homolog

2.8e-57

62.07

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Query:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF
        SLC HTNPVESVAFD +E+LVLAG+SSGAIKLW+LEEAKMVRTLSG RS CT VEFHPFGEFFASGSRD NLKIWDIRKKGC+HTYK   + +  S+IKF
Subjt:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF

Query:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK
        TPDGRWVVSGGFD AVK                            E +L + +A                    +AAGVRAITFHPDGRTLFSGLDESLK
Subjt:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK

Query:  VRS
        V S
Subjt:  VRS

SwissProt top hits

e value

%identity

Alignment

A0A1P8AW69 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1

2.6e-47

49.75

Show/hide

Query:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF
        SLC HT+PV+SVAF+  E+LVLAG+SSG IKLW+LEE+KMVR  +G RS C+ VEFHPFGEF ASGS D NL++WD RKKGC+ TYK   + +  S+I+F
Subjt:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF

Query:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK
        +PDGRWVVSGG D  VK                            E +L + +A                    +A GVRAI FHPDG+TLF GLD+ LK
Subjt:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK

Query:  VRS
        V S
Subjt:  VRS

F4HTH8 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2

6.1e-49

51.71

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HT+ V+SVAFD +E+LVLAG+SSG IKLW++EEAKMVR  +G RS C+ VEFHPFGEF ASGS D NLKIWDIRKKGC+ TYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRWVVSGG D  VK                            E +L + +A                    +A GVR+I FHPDGRTLF GLD+S
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

F4KB17 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3

3.2e-42

45.85

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SL  H++ ++SV FD SE LV AG++SG IKLW+LEEAK+VRTL+G RS C  V FHPFGEFFASGS D NLKIWDIRKKGC+HTYK   + +  + +
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAA-------------------FQAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRW+VSGG D  VK                            E +L + +A                    +  GVR +TF+PDG+++  GL ES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAA-------------------FQAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LK+ S
Subjt:  LKVRS

O61585 Katanin p80 WD40 repeat-containing subunit B1

3.3e-34

48.68

Show/hide

Query:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF
        SL  HT+PV+SV F+ SE LV+AGS SG +K+++LE AK+VRTL+G R++   ++FHPFGEF ASGS D N+K+WD+R+KGC++TYK     +  + IKF
Subjt:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF

Query:  TPDGRWVVSGGFDGAVKEIVLESEAAFQ-----AAGVRAITFHPDGRTLFSG
        +PDG+W+V+   D  +K   L     FQ       GV  I FHP+   L SG
Subjt:  TPDGRWVVSGGFDGAVKEIVLESEAAFQ-----AAGVRAITFHPDGRTLFSG

Q8H0T9 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4

1.7e-43

46.83

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Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SL  H++ ++SV FD SE+LV AG++SG IKLW+LEEAK+VRTL+G RS C  V+FHPFGEFFASGS D NLKIWDIRKKGC+HTYK   + +  + +
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRWVVSGG D  VK                            E +L + +A                    + AGVR ++F+PDG+T+  GL ES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LK+ S
Subjt:  LKVRS

Arabidopsis top hits

e value

%identity

Alignment

AT1G11160.1 Transducin/WD40 repeat-like superfamily protein

1.8e-48

49.75

Show/hide

Query:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF
        SLC HT+PV+SVAF+  E+LVLAG+SSG IKLW+LEE+KMVR  +G RS C+ VEFHPFGEF ASGS D NL++WD RKKGC+ TYK   + +  S+I+F
Subjt:  SLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSIKF

Query:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK
        +PDGRWVVSGG D  VK                            E +L + +A                    +A GVRAI FHPDG+TLF GLD+ LK
Subjt:  TPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDESLK

Query:  VRS
        V S
Subjt:  VRS

AT1G61210.1 Transducin/WD40 repeat-like superfamily protein

4.3e-50

51.71

Show/hide

Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HT+ V+SVAFD +E+LVLAG+SSG IKLW++EEAKMVR  +G RS C+ VEFHPFGEF ASGS D NLKIWDIRKKGC+ TYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRWVVSGG D  VK                            E +L + +A                    +A GVR+I FHPDGRTLF GLD+S
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

AT1G61210.2 Transducin/WD40 repeat-like superfamily protein

4.3e-50

51.71

Show/hide

Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SLC HT+ V+SVAFD +E+LVLAG+SSG IKLW++EEAKMVR  +G RS C+ VEFHPFGEF ASGS D NLKIWDIRKKGC+ TYK   + +  S+I
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRWVVSGG D  VK                            E +L + +A                    +A GVR+I FHPDGRTLF GLD+S
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LKV S
Subjt:  LKVRS

AT5G23430.1 Transducin/WD40 repeat-like superfamily protein

1.2e-44

46.83

Show/hide

Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SL  H++ ++SV FD SE+LV AG++SG IKLW+LEEAK+VRTL+G RS C  V+FHPFGEFFASGS D NLKIWDIRKKGC+HTYK   + +  + +
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRWVVSGG D  VK                            E +L + +A                    + AGVR ++F+PDG+T+  GL ES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LK+ S
Subjt:  LKVRS

AT5G23430.2 Transducin/WD40 repeat-like superfamily protein

1.2e-44

46.83

Show/hide

Query:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI
        + SL  H++ ++SV FD SE+LV AG++SG IKLW+LEEAK+VRTL+G RS C  V+FHPFGEFFASGS D NLKIWDIRKKGC+HTYK   + +  + +
Subjt:  VQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVTLKVLVRSSI

Query:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES
        +FTPDGRWVVSGG D  VK                            E +L + +A                    + AGVR ++F+PDG+T+  GL ES
Subjt:  KFTPDGRWVVSGGFDGAVK----------------------------EIVLESEAAF-------------------QAAGVRAITFHPDGRTLFSGLDES

Query:  LKVRS
        LK+ S
Subjt:  LKVRS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGTCCATTATCGTGATTTCTCTATTGATAGACTTGGAGATTTTTCTTGGTCTTGTGCAGAGTCTTTGTTGTCATACGAATCCAGTTGAATCAGTAGCTTTTGATCC
ATCTGAAATTTTGGTGCTTGCTGGATCTTCTTCTGGTGCAATAAAGTTGTGGAATCTTGAAGAGGCTAAAATGGTTCGCACACTTTCTGGTCAAAGATCAACTTGCACAG
TAGTTGAGTTTCATCCATTTGGCGAGTTCTTTGCATCAGGCTCTAGAGACAATAATCTAAAAATCTGGGATATCAGAAAGAAAGGTTGCGTTCACACATACAAGGTCACA
CTCAAGGTATTAGTACGATCGTCGATCAAGTTCACCCCAGATGGTCGCTGGGTAGTCTCTGGCGGATTTGATGGTGCTGTGAAGGAGATCGTGTTGGAAAGTGAAGCAGC
TTTCCAGGCTGCTGGAGTACGTGCAATCACCTTTCATCCAGATGGGAGGACCCTGTTTTCTGGTCTTGATGAAAGTCTGAAGGTGAGGAGTGTTACTTCCAAACATCTAT
AA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MWSIIVISLLIDLEIFLGLVQSLCCHTNPVESVAFDPSEILVLAGSSSGAIKLWNLEEAKMVRTLSGQRSTCTVVEFHPFGEFFASGSRDNNLKIWDIRKKGCVHTYKVT
LKVLVRSSIKFTPDGRWVVSGGFDGAVKEIVLESEAAFQAAGVRAITFHPDGRTLFSGLDESLKVRSVTSKHL

Sed0018004 (gene) of Chayote v1 genome