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Sed0018019 (gene) of Chayote v1 genome

Gene IDSed0018019
OrganismSechium edule (Chayote v1)
Descriptionsuppressor of mec-8 and unc-52 protein homolog 1
Genome locationLG03:126584..127067
RNA-Seq ExpressionSed0018019
SyntenySed0018019
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8037877.1 hypothetical protein BT93_B0650 [Corymbia citriodora subsp. variegata]3.2e-1147.12Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ    L   K++  GD +  SV     W    I    E  N Y F +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

XP_002281533.1 PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Vitis vinifera]9.3e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

XP_019082149.1 PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X2 [Vitis vinifera]9.3e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

XP_022152482.1 suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Momordica charantia]9.3e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   +     W    I    E  N Y F      + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

XP_038886288.1 suppressor of mec-8 and unc-52 protein homolog 1 [Benincasa hispida]7.1e-1147.12Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F      + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

TrEMBL top hitse value%identityAlignment
A0A1S3B3I2 suppressor of mec-8 and unc-52 protein homolog 15.9e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   +     W    I    E  N Y F      + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

A0A6J1DGD4 suppressor of mec-8 and unc-52 protein homolog 1 isoform X14.5e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   +     W    I    E  N Y F      + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

A0A6J1FGH2 suppressor of mec-8 and unc-52 protein homolog 1-like5.9e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F      + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LW+P
Subjt:  LWKP

A0A6J1JRS0 suppressor of mec-8 and unc-52 protein homolog 1-like5.9e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F      + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LW+P
Subjt:  LWKP

D7SHM1 Uncharacterized protein4.5e-1146.15Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK
        V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMK
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMK

Query:  LWKP
        LWKP
Subjt:  LWKP

SwissProt top hitse value%identityAlignment
Q2TAY7 WD40 repeat-containing protein SMU16.3e-1078.12Show/hide
Query:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
        VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Subjt:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP

Q2TBS9 WD40 repeat-containing protein SMU16.3e-1078.12Show/hide
Query:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
        VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Subjt:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP

Q5ZME8 WD40 repeat-containing protein SMU16.3e-1078.12Show/hide
Query:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
        VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Subjt:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP

Q76B40 WD40 repeat-containing protein SMU16.3e-1078.12Show/hide
Query:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
        VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Subjt:  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP

Q8W117 Suppressor of mec-8 and unc-52 protein homolog 13.9e-1240.57Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFN--------LFLVHEKDVIGVSHHPHRNLVATYSEDST
        V N   ++    L GQ  +  F    +  GD +   V     W      I    E+  L+ FN          +VHEKDVIG++HHPHRNL+ATYSED T
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFN--------LFLVHEKDVIGVSHHPHRNLVATYSEDST

Query:  MKLWKP
        MKLWKP
Subjt:  MKLWKP

Arabidopsis top hitse value%identityAlignment
AT1G73720.1 transducin family protein / WD-40 repeat family protein2.8e-1340.57Show/hide
Query:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFN--------LFLVHEKDVIGVSHHPHRNLVATYSEDST
        V N   ++    L GQ  +  F    +  GD +   V     W      I    E+  L+ FN          +VHEKDVIG++HHPHRNL+ATYSED T
Subjt:  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFN--------LFLVHEKDVIGVSHHPHRNLVATYSEDST

Query:  MKLWKP
        MKLWKP
Subjt:  MKLWKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGG
ACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTATTAAGC
TTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGT
GAAGACAGCACTATGAAACTATGGAAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGG
ACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTATTAAGC
TTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGT
GAAGACAGCACTATGAAACTATGGAAGCCTTGA
Protein sequenceShow/hide protein sequence
MLPRGTMVENLGFKGMLSSRFQVRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFNLFLVHEKDVIGVSHHPHRNLVATYS
EDSTMKLWKP