CuGenDBv2

Gene ID	Sed0018051
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Genome location	LG09:9931853..9933008
RNA-Seq Expression	Sed0018051
Synteny	Sed0018051
Gene Ontology terms	NA
InterPro domains	IPR025558 - Domain of unknown function DUF4283 IPR025836 - Zinc knuckle CX2CX4HX4C IPR040256 - Uncharacterized protein At4g02000-like

Homology

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GenBank top hits

e value

%identity

Alignment

GAU41525.1 hypothetical protein TSUD_140560 [Trifolium subterraneum]

1.2e-18

29.46

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        GE++ S+LD     FWVR++D+P    S + A+ LGN++G F   D +  NR  G+FLR+K S+D+R PL+RG KIK        W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMEDQIKARAGK
        C ++GH  + C  V     N+ S +      +  W          + A  L R         S     + +   SS+  G +S  +  K ++  +     
Subjt:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMEDQIKARAGK

Query:  CMRDFMEEKQLRQV----LAESLGTVGEREDCSMGPKIKPQGPKKGIGLNAEKWMVNE
          +  +  K    +    +AESLG V       +G   K QG  KG      KW+ N+
Subjt:  CMRDFMEEKQLRQV----LAESLGTVGEREDCSMGPKIKPQGPKKGIGLNAEKWMVNE

MCH80348.1 hypothetical protein [Trifolium medium]

3.7e-17

28.33

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL     +FWVR++D+P    S   A+ LGN +GTF   D +  NR  GKFLR++VS+D++ PL+RG K+       E W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMED----QIKA
        C R+GH    C  +        S +E     +  W+    +       +K    S+   S      N +  G+ S          E Q++ D    Q K 
Subjt:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMED----QIKA

Query:  RAGKCMRDFMEEKQLRQ-------VLAESLGTVGEREDCSMG-------------------PKIKPQGPKKGIGLNAEKWMVNEVESEGGTDQKEKPGKK
          G   +D   +   +Q       V+AESLGTV       +G                    K KPQ   K +G   ++ +V+ + ++ GT +  K G+K
Subjt:  RAGKCMRDFMEEKQLRQ-------VLAESLGTVGEREDCSMG-------------------PKIKPQGPKKGIGLNAEKWMVNEVESEGGTDQKEKPGKK

MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]

4.8e-17

42.34

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL+    +FWVR++D+P    S   A+ LGN+LG F   D +  NR  GKFLR++VS+D+R PL+RG K+       + W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERC
        C R+GH    C
Subjt:  CRRLGHLCERC

MCH84359.1 zinc CCHC-type-like protein [Trifolium medium]

2.2e-17

44.14

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL+    +FWVRI+D+P    S + A+ LGN LGTF   D +  NR  GKFLR++  +D+R PL+RG K+K      + W    YE+LP+FC G
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERC
        C R+GH  + C
Subjt:  CRRLGHLCERC

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]

1.7e-17

43.24

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL+    +FWVR++D+P    S   A+ LGN+LGTF   D +  NR  GKFLR++VS+D+R PL+RG K+       + W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERC
        C R+GH    C
Subjt:  CRRLGHLCERC

TrEMBL top hits

e value

%identity

Alignment

A0A2K3MPT1 Cysteine desulfurase mitochondrial-like

8.0e-18

43.24

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL+    +FWVR++D+P    S   A+ LGN+LGTF   D +  NR  GKFLR++VS+D+R PL+RG K+       + W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERC
        C R+GH    C
Subjt:  CRRLGHLCERC

A0A2Z6NZV1 Uncharacterized protein

5.6e-19

29.46

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        GE++ S+LD     FWVR++D+P    S + A+ LGN++G F   D +  NR  G+FLR+K S+D+R PL+RG KIK        W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMEDQIKARAGK
        C ++GH  + C  V     N+ S +      +  W          + A  L R         S     + +   SS+  G +S  +  K ++  +     
Subjt:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMEDQIKARAGK

Query:  CMRDFMEEKQLRQV----LAESLGTVGEREDCSMGPKIKPQGPKKGIGLNAEKWMVNE
          +  +  K    +    +AESLG V       +G   K QG  KG      KW+ N+
Subjt:  CMRDFMEEKQLRQV----LAESLGTVGEREDCSMGPKIKPQGPKKGIGLNAEKWMVNE

A0A392M033 CCHC-type domain-containing protein (Fragment)

1.8e-17

28.33

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL     +FWVR++D+P    S   A+ LGN +GTF   D +  NR  GKFLR++VS+D++ PL+RG K+       E W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMED----QIKA
        C R+GH    C  +        S +E     +  W+    +       +K    S+   S      N +  G+ S          E Q++ D    Q K 
Subjt:  CRRLGHLCERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMED----QIKA

Query:  RAGKCMRDFMEEKQLRQ-------VLAESLGTVGEREDCSMG-------------------PKIKPQGPKKGIGLNAEKWMVNEVESEGGTDQKEKPGKK
          G   +D   +   +Q       V+AESLGTV       +G                    K KPQ   K +G   ++ +V+ + ++ GT +  K G+K
Subjt:  RAGKCMRDFMEEKQLRQ-------VLAESLGTVGEREDCSMG-------------------PKIKPQGPKKGIGLNAEKWMVNEVESEGGTDQKEKPGKK

A0A392M948 Zinc CCHC-type-like protein (Fragment)

2.3e-17

42.34

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL+    +FWVR++D+P    S   A+ LGN+LG F   D +  NR  GKFLR++VS+D+R PL+RG K+       + W    YE+LP+FC  
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERC
        C R+GH    C
Subjt:  CRRLGHLCERC

A0A392MB81 Zinc CCHC-type-like protein (Fragment)

1.1e-17

44.14

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Query:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG
        G ++ SEL+    +FWVRI+D+P    S + A+ LGN LGTF   D +  NR  GKFLR++  +D+R PL+RG K+K      + W    YE+LP+FC G
Subjt:  GEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCG

Query:  CRRLGHLCERC
        C R+GH  + C
Subjt:  CRRLGHLCERC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G36228.1 nucleic acid binding;zinc ion binding

1.1e-06

31.13

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Query:  FTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARL--SYEKLPDFCCGCRRLGHLCE
        F   WV I  +P    S  +   + + LG  V  D   +  ++  F+RVKV +D   PLR   +++    AS + A +   YEKL   C  C R+ H   
Subjt:  FTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARL--SYEKLPDFCCGCRRLGHLCE

Query:  RCGIVV
         C  VV
Subjt:  RCGIVV

Sequences

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CDS sequence

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ATGAGAGGTGAAAAGAGAATCTCTGAGCTCGATTTTGGTTTTACTGCCTTTTGGGTTAGGATTCACGATGTCCCCCCTACTTGTCACTCTTTAAGCAGTGCCAGAGGGTT
AGGAAATCTGCTTGGGACCTTTGTGGGATGGGATAGTGAAGGTGATAATAGAAATAAAGGAAAATTTTTAAGGGTAAAGGTTTCTATAGATATTAGAAATCCTCTACGGA
GGGGTTTGAAGATTAAAAGCGGGACAATGGCCAGTGAAAAATGGGCTCGTTTGTCGTACGAAAAACTTCCAGATTTTTGCTGTGGTTGCAGAAGACTAGGTCATTTATGC
GAGAGATGTGGGATTGTGGTCATTTTTGCTGTGAACCATTTATCCATGGTAGAGGGGAACGGGAGCAAGTGGTTACAGTGGGTTATAGGAATCGGGGTCGAGGTCGAGGT
CGTGGGCGCGGAAAAATTAGATAGGGGATCTCATCGAAAAGGAAGCGGTTTATCGGTGTTCGAGAATGACAGAAAAGTTGGAGAGTTGTCTAGTCGTTGCAATGGTCAGA
AAAGTGCAGCGGAGGACCAAAAAATGGAGGATCAAATTAAGGCTAGGGCAGGAAAATGTATGAGAGATTTCATGGAAGAGAAGCAATTGAGACAGGTTCTGGCTGAGTCG
CTAGGGACAGTTGGGGAGAGGGAGGACTGCAGCATGGGGCCGAAAATTAAGCCTCAAGGGCCCAAGAAAGGCATTGGGCTAAATGCTGAAAAGTGGATGGTCAATGAAGT
GGAGAGTGAAGGTGGGACGGATCAAAAGGAAAAACCGGGCAAAAAGGATTGGGCCCAAGGTAATGTCTGTTGTAGCAACGTGGCTAAATCGGCGAACGAGATGTTAGTTA
AGGAGCATCTGCCTAGTGTGGCAAAAAGGGGCGTGGAAGTTGGTGGTTCTGAATTTTTAAATATACTTGGAGAGATGGATTCAATTGGGCCGACTGCGAAGATGGAGGAG
GTTCTATGA

mRNA sequence

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Protein sequence

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MRGEKRISELDFGFTAFWVRIHDVPPTCHSLSSARGLGNLLGTFVGWDSEGDNRNKGKFLRVKVSIDIRNPLRRGLKIKSGTMASEKWARLSYEKLPDFCCGCRRLGHLC
ERCGIVVIFAVNHLSMVEGNGSKWLQWVIGIGVEVEVVGAEKLDRGSHRKGSGLSVFENDRKVGELSSRCNGQKSAAEDQKMEDQIKARAGKCMRDFMEEKQLRQVLAES
LGTVGEREDCSMGPKIKPQGPKKGIGLNAEKWMVNEVESEGGTDQKEKPGKKDWAQGNVCCSNVAKSANEMLVKEHLPSVAKRGVEVGGSEFLNILGEMDSIGPTAKMEE
VL

Sed0018051 (gene) of Chayote v1 genome