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Sed0018060 (gene) of Chayote v1 genome

Gene IDSed0018060
OrganismSechium edule (Chayote v1)
DescriptionGlutamate receptor
Genome locationLG05:42147857..42152837
RNA-Seq ExpressionSed0018060
SyntenySed0018060
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0015276 - ligand-gated ion channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608645.1 Glutamate receptor 3.3, partial [Cucurbita argyrosperma subsp. sororia]4.5e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
KAG7037962.1 Glutamate receptor 3.3 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
XP_022136591.1 glutamate receptor 3.3 [Momordica charantia]5.8e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
XP_022941510.1 glutamate receptor 3.3-like [Cucurbita moschata]4.5e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
XP_023521441.1 glutamate receptor 3.3-like [Cucurbita pepo subsp. pepo]4.5e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
TrEMBL top hitse value%identityAlignment
A0A6J1C3X4 Glutamate receptor2.8e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
A0A6J1FCJ4 Glutamate receptor1.8e-0476.32Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADP ILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
A0A6J1FTV8 Glutamate receptor2.2e-0578.95Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPTILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
A0A6J1ICM2 Glutamate receptor1.8e-0476.32Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADP ILP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
A0A6J1IYK4 Glutamate receptor2.8e-0576.32Show/hide
Query:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        VNI AIFS D TIGK +KIAIE+A KDVNADPT+LP T
Subjt:  VNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42540.1 glutamate receptor 3.31.1e-0457.5Show/hide
Query:  KDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT
        K V I +IFS D  IGK +KIAI++A KDVN++P IL  T
Subjt:  KDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATTGCTAACCTTATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGA
ACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAG
TCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGCTGCTCTCGTATAAAGGATACA
ACCTCATGGGTGATTATTGGGAAGATGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATTGCTAACCTTATTGCCATTGAACAAGCTGTAAAAGATGTGAACATTGTTGCTATTTTCTCTTCTGATTGTACCATTGGAAAAGGTTCCAAGATTGCCATCGA
ACAAGCTGCAAAAGATGTGAATGCGGATCCCACCATTCTTCCCAGAACTTGGCCAACTGTAGTGGATTTTTGGGTAGAAGATTTGCGTGGGAGAGAAGGAAAGAAAGTAG
TCTGCACAGGAGGGTTTAAACCAGAACCACAAGAAGCAAAATACATTGGTCACAGAGGATGGCTTTTAAAAACAGGGCAGAAATTAAGCTGCTCTCGTATAAAGGATACA
ACCTCATGGGTGATTATTGGGAAGATGATCTAG
Protein sequenceShow/hide protein sequence
MSIANLIAIEQAVKDVNIVAIFSSDCTIGKGSKIAIEQAAKDVNADPTILPRTWPTVVDFWVEDLRGREGKKVVCTGGFKPEPQEAKYIGHRGWLLKTGQKLSCSRIKDT
TSWVIIGKMI