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Sed0018152 (gene) of Chayote v1 genome

Gene IDSed0018152
OrganismSechium edule (Chayote v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Genome locationLG13:18700110..18701443
RNA-Seq ExpressionSed0018152
SyntenySed0018152
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1888201.1 hypothetical protein Lal_00030082, partial [Lupinus albus]3.2e-6067.63Show/hide
Query:  MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQ----------SSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFS
        MS+QLL LNAFRGEP S+  EWHFT NHNSSADSSTSV SDLHL   +           +GLLPLLGSL+FHVLFHSPMGVLFTLPS YYFTIGH GVFS
Subjt:  MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQ----------SSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFS

Query:  LARWS----------LLI---HTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISG
        LARWS          LL+   H G ++    R+  +RLY SPTTPFSRFRLLPF SPLLRESL + FP ATKM     LSLACPWIQ+ FE+LTYSGISG
Subjt:  LARWS----------LLI---HTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISG

Query:  STLIFNS
        STLIFNS
Subjt:  STLIFNS

KAF3449759.1 hypothetical protein FNV43_RR05837 [Rhamnella rubrinervis]1.2e-5685.31Show/hide
Query:  LHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLL
        L  ARGQS GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHV HATRVR                LLPFRSPLL ESLL
Subjt:  LHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLL

Query:  LSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS
        LSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS
Subjt:  LSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS

KAG4211951.1 hypothetical protein ERO13_A02G134101v2 [Gossypium hirsutum]6.8e-5559.35Show/hide
Query:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL
        HF  N  +   S  S  +  H        ARGQS GLLPLLGSLRFHVLFHSP GVLFTLPSRYYF IGHPGVFSLAR SLLIHTGFHVPHATRVR    
Subjt:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL

Query:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS-------------------------------
                    LLPF SPLLRESLLLSFP ATKMFQFARLSL CPWIQQQFERLTYSGISGSTLIFNS                               
Subjt:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS-------------------------------

Query:  -RSIS---SLTTPFLVSGIQLQERTRN-GELSPFSARLFGLKNAGF
         R +S    LT     S      +TRN GELSP   RLFGLKNAGF
Subjt:  -RSIS---SLTTPFLVSGIQLQERTRN-GELSPFSARLFGLKNAGF

THG12336.1 hypothetical protein TEA_001523 [Camellia sinensis var. sinensis]6.0e-5164.65Show/hide
Query:  MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQSSGLLPLLGSLRFHVLFHSPMGVLF---TLPSRYYFTIG-----------HP
        MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHL    S  L P   +  +    HS  G        P+ +  T+            HP
Subjt:  MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQSSGLLPLLGSLRFHVLFHSPMGVLF---TLPSRYYFTIG-----------HP

Query:  GVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS
         +  L R        +  P   R+  RRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSL CPWIQQQFERLTYSGISGS LIFNS
Subjt:  GVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS

YP_009526534.1 hypothetical protein [Ammopiptanthus mongolicus]1.4e-5269.61Show/hide
Query:  QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFH
        Q+L++ AF   P  S    +    + S A SST   S+        +GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLA    L      
Subjt:  QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFH

Query:  VPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS
             R+  RRLY SPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFE+LTYSGISGSTLIFNS
Subjt:  VPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS

TrEMBL top hitse value%identityAlignment
A0A2N9HF66 Uncharacterized protein7.4e-6369.48Show/hide
Query:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL
        HF  N  +   S  S  +  H        ARGQS GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSL    LL           R+  RRL
Subjt:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL

Query:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSP
        YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS    ++    P L V  IQLQE  +  +  P
Subjt:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSP

Query:  FSARLFGLKNAGF
         SARLFGLKNAGF
Subjt:  FSARLFGLKNAGF

A0A2N9HSC7 Uncharacterized protein1.1e-6376.47Show/hide
Query:  LHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLL
        L  ARGQS GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSL    LL           R+  RRLYCSPTTPFSRFRLLPFRSPLLRESLL
Subjt:  LHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLL

Query:  LSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSPFSARLFGLKNAGF
        LSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS    ++    P L V  IQLQE  +  +  P SARLFGLKNAGF
Subjt:  LSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSPFSARLFGLKNAGF

A0A2N9I3M4 Uncharacterized protein1.9e-6377.17Show/hide
Query:  ARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSF
        ARGQS GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSL    LL           R+  RRLYCSPTTPFSRFRLLPFRSPLLRESLLLSF
Subjt:  ARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSF

Query:  PLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSPFSARLFGLKNAGF
        PLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS    ++    P L V  IQLQE  +  +  P SARLFGLKNAGF
Subjt:  PLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSPFSARLFGLKNAGF

A0A2N9I5R1 Uncharacterized protein7.4e-6369.48Show/hide
Query:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL
        HF  N  +   S  S  +  H        ARGQS GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSL    LL           R+  RRL
Subjt:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL

Query:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSP
        YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS    ++    P L V  IQLQE  +  +  P
Subjt:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSP

Query:  FSARLFGLKNAGF
         SARLFGLKNAGF
Subjt:  FSARLFGLKNAGF

A0A2N9I7K2 Uncharacterized protein7.4e-6369.48Show/hide
Query:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL
        HF  N  +   S  S  +  H        ARGQS GLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSL    LL           R+  RRL
Subjt:  HFTPNHNSSADSSTSVGSDLH-------LARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRPRRL

Query:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSP
        YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS    ++    P L V  IQLQE  +  +  P
Subjt:  YCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNS--RSISSLTTPFL-VSGIQLQERTRNGELSP

Query:  FSARLFGLKNAGF
         SARLFGLKNAGF
Subjt:  FSARLFGLKNAGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATC
AGTCGGTTCGGACCTCCACTTAGCACGCGGTCAGAGTTCTGGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCA
CCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGCCCCATGCTACTCGGGTC
AGGCCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGC
TACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTTGAAAGGTTGACCTATTCGGGAATCTCCGGATCTACGCTTATTTTCAACT
CCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTCTCTGGAATCCAGCTACAGGAGAGAACCAGGAACGGAGAGCTTTCCCCCTTTTCCGCCCGCCTCTTTGGTCTT
AAGAATGCTGGTTTTAAGAATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATC
AGTCGGTTCGGACCTCCACTTAGCACGCGGTCAGAGTTCTGGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCA
CCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGCCCCATGCTACTCGGGTC
AGGCCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGC
TACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTTGAAAGGTTGACCTATTCGGGAATCTCCGGATCTACGCTTATTTTCAACT
CCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTCTCTGGAATCCAGCTACAGGAGAGAACCAGGAACGGAGAGCTTTCCCCCTTTTCCGCCCGCCTCTTTGGTCTT
AAGAATGCTGGTTTTAAGAATGAGTGA
Protein sequenceShow/hide protein sequence
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLARGQSSGLLPLLGSLRFHVLFHSPMGVLFTLPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRV
RPRRLYCSPTTPFSRFRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFERLTYSGISGSTLIFNSRSISSLTTPFLVSGIQLQERTRNGELSPFSARLFGL
KNAGFKNE