CuGenDBv2

Gene ID	Sed0018161
Organism	Sechium edule (Chayote v1)
Description	Complex1_LYR domain-containing protein
Genome location	LG01:23360636..23363829
RNA-Seq Expression	Sed0018161
Synteny	Sed0018161
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

4.0e-45

85.45

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKKH+GKE+SKKHF +YVAQ FRDKS LS+PHS+Q +IKLARDYT+LL SVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL LPEVYQP
Subjt:  GLRLPEVYQP

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

2.8e-46

89.09

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKKHIGKE++KKHF +YVAQ FR+KSTLS+PHSVQ KIKLARDYT+LL SVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL+LPEVYQP
Subjt:  GLRLPEVYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

1.1e-45

88.18

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK HIGKE++KKHF +YVAQ FR+KSTLS+PHSVQ KIKLARDYT+LL SVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL+LPEVYQP
Subjt:  GLRLPEVYQP

XP_023544932.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo]

7.6e-44

84.55

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEA QVAKVYRQLLKAVK HIGKE++KKHF +YVAQ FR+ ST+S+PHSVQ KIKLARDYT+LL SVHHQKDLLFSYNIA+DRSDEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL+LPEVYQP
Subjt:  GLRLPEVYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

6.5e-43

83.64

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK HIGKE+SKKHF +YVAQ FRDK+ LS+PHSVQ +IKLA DYT+LL SVHHQKDLLFSYNIA+DRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL+LPE YQP
Subjt:  GLRLPEVYQP

TrEMBL top hits

e value

%identity

Alignment

A0A059BGX6 Uncharacterized protein

9.4e-40

76.36

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M SEALQ AKVYR LLKAVK+HIGKE++KKHFAEYV + FR    LS+P S+Q KIKLA+DYTYLL SVHH  DLLFSYNIA+DR++EMKR+LGKSA+SV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GLRLPEVYQP
Subjt:  GLRLPEVYQP

A0A0A0L9E2 Uncharacterized protein

2.0e-45

85.45

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKKH+GKE+SKKHF +YVAQ FRDKS LS+PHS+Q +IKLARDYT+LL SVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL LPEVYQP
Subjt:  GLRLPEVYQP

A0A6J1C0V5 uncharacterized protein LOC111006395

9.1e-43

83.64

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        MSSEALQVA+VYR+LLKAVK HIGKE+SKKHF +YVAQ FR++S LSEPHS+Q KIKLA DY  LL SVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GLRLPE YQP
Subjt:  GLRLPEVYQP

A0A6J1EY92 uncharacterized protein LOC111439884

1.4e-46

89.09

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVKKHIGKE++KKHF +YVAQ FR+KSTLS+PHSVQ KIKLARDYT+LL SVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL+LPEVYQP
Subjt:  GLRLPEVYQP

A0A6J1HS51 uncharacterized protein LOC111467294

5.2e-46

88.18

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Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        M+SEALQVAKVYRQLLKAVK HIGKE++KKHF +YVAQ FR+KSTLS+PHSVQ KIKLARDYT+LL SVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GL+LPEVYQP
Subjt:  GLRLPEVYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.1e-32

65.45

Show/hide

Query:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV
        MS E +  A+VYR LLKAV KH+GKED K HF ++V Q FR K+  SE      KI LAR+YTYLL S+H  KDLLFSYNIA+DR++EMKR+L KSAASV
Subjt:  MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASV

Query:  GLRLPEVYQP
        GLRLPEVY+P
Subjt:  GLRLPEVYQP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTTCAGAAGCCTTGCAGGTCGCTAAGGTTTACCGCCAGCTTCTCAAAGCTGTGAAGAAGCACATTGGAAAGGAAGATAGCAAGAAGCATTTTGCGGAATATGTGGC
CCAAAGTTTCAGGGATAAAAGCACACTTTCAGAACCCCATTCTGTTCAACACAAAATCAAGCTTGCTCGCGATTACACATATCTACTTACCAGTGTGCACCATCAAAAGG
ACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGATGAAATGAAGCGAATATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTAGACTTCCAGAAGTTTATCAACCC
TAA

mRNA sequence

Show/hide mRNA sequence

GGCAAAACCTCAACACCTTCCCCCAAACACCCCCTCTTAAACCCATCATCTTCCCCAAAAACGCTCTCCGCCTTCTTCACTCCGTTTCAGCAGCTCAGTTTCGCCGTCGC
CGTCGCCGTCGCCGTCCATCTTCCGCTCAATTCCGGCGTATCTCTGATTTTCTTCTCTCTTGCGTTTACTGTGTGTTATTGGTCAACATTTCAAAAGGAATTGTGAAGTT
CTTTAGTGACAAAAAGAGGCTTGAAGAGTTCGACAAAGTCTTGAAAATGAGTTCAGAAGCCTTGCAGGTCGCTAAGGTTTACCGCCAGCTTCTCAAAGCTGTGAAGAAGC
ACATTGGAAAGGAAGATAGCAAGAAGCATTTTGCGGAATATGTGGCCCAAAGTTTCAGGGATAAAAGCACACTTTCAGAACCCCATTCTGTTCAACACAAAATCAAGCTT
GCTCGCGATTACACATATCTACTTACCAGTGTGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTATTGATAGATCAGATGAAATGAAGCGAATATTGGGCAA
GTCTGCAGCAAGTGTGGGGCTTAGACTTCCAGAAGTTTATCAACCCTAATGCCCTGTCGTTGTTTTAATAAGAAGAAGCACTCTTTCCTCCTAAGAATACTTCATTTTCT
TTATATTATGAGATTTTTCCTCTTATTTGATGAATTTGGCTGCTATTTGTTTCACTTCCAATTAATTGTAACTTTATAATGTAACCAAAATGGTTAAAAGATCACAGAGA
ACCAAAAAATTATAAATTCAATTTATGGTGGCTATCTATCTATGAATTATTTTTTTA

Protein sequence

Show/hide protein sequence

MSSEALQVAKVYRQLLKAVKKHIGKEDSKKHFAEYVAQSFRDKSTLSEPHSVQHKIKLARDYTYLLTSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLRLPEVYQP

Sed0018161 (gene) of Chayote v1 genome