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Sed0018203 (gene) of Chayote v1 genome

Gene IDSed0018203
OrganismSechium edule (Chayote v1)
DescriptionRING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Genome locationLG03:39455725..39458279
RNA-Seq ExpressionSed0018203
SyntenySed0018203
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060071.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa]1.7e-2083.82Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR
        MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETL+DLL HTAIHT+ AYPRFR  FSRLF S  RVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR

KAE8649764.1 hypothetical protein Csa_012384 [Cucumis sativus]1.3e-2083.82Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR
        MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETL+DLL HTAIHT+ AYPRFR  FSRLF S+ RVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR

KAG6595630.1 hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2081.16Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSRI
        MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETL++LLR +A HTL  YPRFR+ FSRLF S+ RVSNSR+
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSRI

KAG6603254.1 hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia]9.5e-1979.41Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR
        MLQLFFAVAFSA PLT YVPPIRSLNLFVETL+DL RHTA HT  AYPRFR  FSR+F S+ RVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR

KAG7037385.1 hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma]9.5e-1979.41Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR
        MLQLFFAVAFSA PLT YVPPIRSLNLFVETL+DL RHTA HT  AYPRFR  FSR+F S+ RVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR

TrEMBL top hitse value%identityAlignment
A0A0A0KZF7 Uncharacterized protein6.4e-2183.82Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR
        MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETL+DLL HTAIHT+ AYPRFR  FSRLF S+ RVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR

A0A5A7V2T5 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 18.4e-2183.82Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR
        MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETL+DLL HTAIHT+ AYPRFR  FSRLF S  RVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSR

A0A6P6AMB2 uncharacterized protein LOC111310902 isoform X18.7e-1874.24Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSN
        MLQLFFAVAFSAVPLTLYVPPIRSLNLFVET++D+LR T ++TL AYPR R GFSR+F S+  +S+
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSN

A0A6P6AMC9 uncharacterized protein LOC111310902 isoform X28.7e-1874.24Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSN
        MLQLFFAVAFSAVPLTLYVPPIRSLNLFVET++D+LR T ++TL AYPR R GFSR+F S+  +S+
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSN

W9QPR0 Uncharacterized protein8.7e-1875.38Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVS
        MLQLFFAVAFSAVPLTLYVPPIRSLNLFVET++DL R TA++TL AYPR R  FSR++ S+LR++
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52105.1 unknown protein1.7e-1052.63Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRL
        MLQLFF +AFSA PLTLY+PPIR L +FVET++++     +++   +PR R  +SRL
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAGCTGTTCTTCGCGGTGGCTTTCTCGGCAGTCCCATTGACGCTATATGTGCCGCCGATTCGAAGCCTCAATCTGTTCGTGGAAACCCTACAAGACCTTCTCCG
CCACACTGCCATCCATACGCTCCCAGCTTATCCTCGCTTCCGCCGAGGATTCTCTCGCCTTTTCCGCTCTCTACTCCGCGTTTCTAATTCCAGGATAACAAGAAGCTAG
mRNA sequenceShow/hide mRNA sequence
GAAAAAGGAAAATAGGATACAACAAAAGTTTTCTTGGAGAAAAAGAAAAATAATAATTAGTCTTATTATTAAAATATAGAAATGATAAGCCTCACTTGTTCATTGACCGT
TCTCCTCTTTCGTTGAATTTTCCTCTTTCAATTTCAATTTCAATTCTTGGATCTGTGCAGATTTTGATCTGCCATGCTTCAGCTGTTCTTCGCGGTGGCTTTCTCGGCAG
TCCCATTGACGCTATATGTGCCGCCGATTCGAAGCCTCAATCTGTTCGTGGAAACCCTACAAGACCTTCTCCGCCACACTGCCATCCATACGCTCCCAGCTTATCCTCGC
TTCCGCCGAGGATTCTCTCGCCTTTTCCGCTCTCTACTCCGCGTTTCTAATTCCAGGATAACAAGAAGCTAGATAATTTGGGAGACCCAGCCCTTAACTTAAGATATTAA
GTCAATGCCACCAACAATGACTCTAGCCACAACAGTCAAGTGGCCCAACCAATAGACTAAAATCAGAGCAGCCAGCACTCAAGAATATGTGGGAATATACAACATATAGT
CTTGTTATATGTACTCTACTTGTCTTAGACACACAACTCAACAATATATAATTAATGTATGTACTCACTGATTATATGCAGATCATAACACACAACCTCATTATATATAC
TCTATATGTTTGACACTGCCTTGATAGTATGTAATGTTAGCATGATCAGTAACCTTAAACATCTTAAGCCATCACATACATTTTGAAGTAGATGTGGTCTTAACTTCGAT
TTTTCGTATTTGAGTGGTCAC
Protein sequenceShow/hide protein sequence
MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLQDLLRHTAIHTLPAYPRFRRGFSRLFRSLLRVSNSRITRS