| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022158561.1 DNA-directed RNA polymerase V subunit 5A [Momordica charantia] | 7.2e-105 | 85.9 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGFE E V + +CLSS++D+GS E+HRYFLCRRTVLEMLRDRG+T +S+ DLTLQQFR+++GQSPDVDRLKLSAVHRSDPSKR+LVIFCGTG+V
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KVN IR IAGQI+NKDTLHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_022950955.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata] | 4.4e-102 | 83.7 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGF E V + +CLSS++DDG+ E+HRY+L RRTVLEMLRDRG+TIN S+IDLTLQQFR+++GQ DVDRLKLSA HR+DPSKR+LVIFCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KV+ IR IAGQI+NK+TLHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_022971518.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima] | 2.6e-102 | 83.7 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGF E V + +CLSS++DDG+ E+HRY+L RRTVLEMLRDRG+TIN S+IDLTLQQFR+++GQ PDVDRLKLSA HR+DPSKR+LVIFCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KV+ IR IAGQI+NK+TLHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
LEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 2.0e-102 | 83.7 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGF E V + +CLSS++DDG+ E+HRY+L RRTVLEMLRDRG+TIN S+IDLTLQQFR+++GQ PDVDRLKLSA H +DPSKR+LVIFCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KV+ IR IAGQI+NK+TLHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 2.1e-104 | 85.46 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGFE E V +CLSS++D+G+ E+HRYFL RRTVLEMLRDRG+T+NSS+IDL+LQQFR+++GQSPDVDRLKLSAVHRSDPSKR+LVIFCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KVN IR IAGQI NKD+LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKH LKPNHQVL+EEEKQKLL QYSIEEKQLPR+LR DA+ARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LCG9 Uncharacterized protein | 8.0e-102 | 83.26 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGFE E V +CLSS++DDG+ E+HRYFL RRTV+EML+DRG+TINS ID +LQQFR+ GQ PDVDRLKLSA H SDPSKR+LV+FCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KVN IR IAGQI NKD+LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMTR+H+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A1S3B7M5 DNA-directed RNA polymerase V subunit 5A | 2.3e-101 | 83.26 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGFE E V +CLSS++DDG+ E+HRYFL RRTV+EML+DRG+TINS +IDL+LQQFR + GQ PDVDRLKL A H SDPSKR+LV+FCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KVN IR IAGQI NKD+LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 3.5e-105 | 85.9 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGFE E V + +CLSS++D+GS E+HRYFLCRRTVLEMLRDRG+T +S+ DLTLQQFR+++GQSPDVDRLKLSAVHRSDPSKR+LVIFCGTG+V
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KVN IR IAGQI+NKDTLHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 2.1e-102 | 83.7 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGF E V + +CLSS++DDG+ E+HRY+L RRTVLEMLRDRG+TIN S+IDLTLQQFR+++GQ DVDRLKLSA HR+DPSKR+LVIFCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KV+ IR IAGQI+NK+TLHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 1.2e-102 | 83.7 | Show/hide |
Query: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
MEEDGF E V + +CLSS++DDG+ E+HRY+L RRTVLEMLRDRG+TIN S+IDLTLQQFR+++GQ PDVDRLKLSA HR+DPSKR+LVIFCGTGAV
Subjt: MEEDGFEEEAEGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAV
Query: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
KV+ IR IAGQI+NK+TLHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKH LKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
LEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 7.9e-30 | 34.45 | Show/hide |
Query: DGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDR-----LKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLH
D ET+R + R+TVL+M+ DRG+ + E+D L+ F++ G P + L + H DP+ +M V F + + I+ I Q M + +
Subjt: DGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDR-----LKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCV
++TYR V
Subjt: RSHVTYRCV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 1.3e-32 | 39.5 | Show/hide |
Query: ETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLHGLILIVQNQ
E R + ++T+++MLRDRG+ I SE+ +T QQF + HG + + L R+D S ++ + F V V ++ + M + + IL+VQ
Subjt: ETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLHGLILIVQNQ
Query: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVNI +HVL P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 1.4e-50 | 44.3 | Show/hide |
Query: MEEDGFEEEAEGVGVE--SCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTG
M E+G E E + +C+S D G E+ R++L R T EMLRDRG+ +N +E+ LTL +FR + G+ P+++RL++ RSDP K++LV+F GT
Subjt: MEEDGFEEEAEGVGVE--SCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTG
Query: AVKVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIAR
+ V +R + QI N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH+ +P ++L +EEK++LL ++++E+KQLP L D+ R
Subjt: AVKVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIAR
Query: YYGLEKGQVVKVTYDGDMTRSHVTYRCV
YYGL+K QVVK+TY + VTYRC+
Subjt: YYGLEKGQVVKVTYDGDMTRSHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 6.8e-74 | 61.9 | Show/hide |
Query: CLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDT
CLS ++D S E+HRY+L RR L+MLRDRG+ ++ +I+L+L FR ++G+ PDVDRL++SA+HRSD +K++ ++F GT VKVN IR + I++++T
Subjt: CLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDT
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH LKP HQVL +EEK LL ++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 1.9e-71 | 59.26 | Show/hide |
Query: EGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAG
EG G E + + S E H+Y+L RRT +EMLRDRG+ ++ +I+L+LQQFR L+G+ PDVD L++SA HR D SK++ V+FCGTG VKVN +R IA
Subjt: EGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAG
Query: QIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKV
+++++ + GLIL++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KHVL+P HQVL ++EK+ LL ++SIEEKQLPRL D I RYYGLE GQV+KV
Subjt: QIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKV
Query: TYDGDMTRSHVTYRCV
TY +++ SHVTYRCV
Subjt: TYDGDMTRSHVTYRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 1.3e-72 | 59.26 | Show/hide |
Query: EGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAG
EG G E + + S E H+Y+L RRT +EMLRDRG+ ++ +I+L+LQQFR L+G+ PDVD L++SA HR D SK++ V+FCGTG VKVN +R IA
Subjt: EGVGVESCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAG
Query: QIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKV
+++++ + GLIL++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KHVL+P HQVL ++EK+ LL ++SIEEKQLPRL D I RYYGLE GQV+KV
Subjt: QIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKV
Query: TYDGDMTRSHVTYRCV
TY +++ SHVTYRCV
Subjt: TYDGDMTRSHVTYRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 9.2e-34 | 39.5 | Show/hide |
Query: ETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLHGLILIVQNQ
E R + ++T+++MLRDRG+ I SE+ +T QQF + HG + + L R+D S ++ + F V V ++ + M + + IL+VQ
Subjt: ETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLHGLILIVQNQ
Query: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVNI +HVL P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 9.8e-52 | 44.3 | Show/hide |
Query: MEEDGFEEEAEGVGVE--SCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTG
M E+G E E + +C+S D G E+ R++L R T EMLRDRG+ +N +E+ LTL +FR + G+ P+++RL++ RSDP K++LV+F GT
Subjt: MEEDGFEEEAEGVGVE--SCLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTG
Query: AVKVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIAR
+ V +R + QI N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH+ +P ++L +EEK++LL ++++E+KQLP L D+ R
Subjt: AVKVNVIRYIAGQIMNKDTLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIAR
Query: YYGLEKGQVVKVTYDGDMTRSHVTYRCV
YYGL+K QVVK+TY + VTYRC+
Subjt: YYGLEKGQVVKVTYDGDMTRSHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 4.8e-75 | 61.9 | Show/hide |
Query: CLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDT
CLS ++D S E+HRY+L RR L+MLRDRG+ ++ +I+L+L FR ++G+ PDVDRL++SA+HRSD +K++ ++F GT VKVN IR + I++++T
Subjt: CLSSFLDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQSPDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDT
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH LKP HQVL +EEK LL ++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 4.4e-28 | 36.71 | Show/hide |
Query: LDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQS---PDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLH
+ D E R F RRTVL+MLRDRG+TI S+++L ++F Q ++ + + L +SA +P+ ++ V + V V VI+ M D +H
Subjt: LDDGSAETHRYFLCRRTVLEMLRDRGFTINSSEIDLTLQQFRQLHGQS---PDVDRLKLSAVHRSDPSKRMLVIFCGTGAVKVNVIRYIAGQIMNKDTLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
I++V IT A AV + +E+F+ +L+ NIT+H L + VL ++ K+KLL+ Y++++ QLPR+L TD +ARYYGL++GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHVLKPNHQVLTEEEKQKLLDQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYR
+ TYR
Subjt: RSHVTYR
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