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Sed0018246 (gene) of Chayote v1 genome

Gene IDSed0018246
OrganismSechium edule (Chayote v1)
Descriptiontrafficking protein particle complex subunit 2
Genome locationLG05:46465031..46475058
RNA-Seq ExpressionSed0018246
SyntenySed0018246
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147330.1 transport protein particle 20 kDa subunit [Cucumis sativus]2.9e-4997.14Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
XP_022947788.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita moschata]1.0e-4998.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
XP_022947789.1 transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata]1.0e-4998.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
XP_022970900.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima]1.0e-4998.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
XP_038900562.1 transport protein particle 20 kDa subunit [Benincasa hispida]2.9e-4997.14Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
TrEMBL top hitse value%identityAlignment
A0A6J1DTW9 transport protein particle 20 kDa subunit1.8e-4997.14Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRN+IPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
A0A6J1G7K7 trafficking protein particle complex subunit 2 isoform X14.9e-5098.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
A0A6J1G7X4 transport protein particle 20 kDa subunit isoform X24.9e-5098.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
A0A6J1I1U1 transport protein particle 20 kDa subunit isoform X24.9e-5098.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
A0A6J1I468 trafficking protein particle complex subunit 2 isoform X14.9e-5098.1Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQD+AWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK
SwissProt top hitse value%identityAlignment
E2QV03 Trafficking protein particle complex subunit 22.4e-2245.37Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+ F 
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ

Query:  EVHELYIK
        +V++LYIK
Subjt:  EVHELYIK
F1SRI0 Trafficking protein particle complex subunit 22.4e-2245.37Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+ F 
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ

Query:  EVHELYIK
        +V++LYIK
Subjt:  EVHELYIK
P0DI81 Trafficking protein particle complex subunit 22.4e-2245.37Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+ F 
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ

Query:  EVHELYIK
        +V++LYIK
Subjt:  EVHELYIK
P0DI82 Trafficking protein particle complex subunit 2B2.4e-2245.37Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+ F 
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ

Query:  EVHELYIK
        +V++LYIK
Subjt:  EVHELYIK
Q3T0F2 Trafficking protein particle complex subunit 22.4e-2245.37Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+ F 
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQ

Query:  EVHELYIK
        +V++LYIK
Subjt:  EVHELYIK
Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein1.7e-5090.48Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH
        MA TACFIIV RN+IPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQD+AWTTSAMFLK+VDRFNDLVVSVYVTAGHTRLMLLHDSRN+DGIKS FQEVH
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVH

Query:  ELYIK
        ELYIK
Subjt:  ELYIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACAGCTTGTTTCATCATCGTGAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGGGAGGATTCTGCTCAGCTTCATCAGTT
TATATTGCACGCGTCCCTTGACATTGTTCAAGACATGGCATGGACTACTAGTGCTATGTTCCTCAAAGCAGTCGATAGGTTCAATGATTTGGTGGTCTCTGTATATGTAA
CTGCTGGTCATACGCGTTTGATGTTGCTTCATGACTCCCGCAATGATGATGGAATCAAGAGCTTATTTCAAGAGGTTCATGAGCTTTACATAAAGGATCATTTGACGAAG
AAGATTAATGGTAGGGGACATGAAGTTGGGGGTCTTTACATCTTGGATCAGCAACAAGTCCAAGCTGTAGCATGTTCAACACTATGTCTGTGTTCAAGGTCCATTATCGG
TTGGGTCACCCATCGTTGGCCGTCTTGA
mRNA sequenceShow/hide mRNA sequence
TAAATTATGGGTAATTAATTAATTTAATACACAATTGTAACATTATTTGTTCGATGTCTCTTAATGCCTGACCTAGGGATAGATGTGGTTACCGTGTTTCAAAAAATTTA
ATACACAATCGTTAAATAATGGGAATCATTGTAATTAATTAATAATTTAGATGAAATTCAGATATTTGTTTAGAAGAGTAAGGCATGCCCTTGTTTTCTTTGTTTTCTTT
GAAAGGAATACCCTTTAGCCCAGATCAGATCATCCCACCCCTCCCACCGGAAACCTCTCGAATTGCGCTTCTCAGCAATGGCGACCACAGCTTGTTTCATCATCGTGAGT
AGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGGGAGGATTCTGCTCAGCTTCATCAGTTTATATTGCACGCGTCCCTTGACATTGTTCAAGA
CATGGCATGGACTACTAGTGCTATGTTCCTCAAAGCAGTCGATAGGTTCAATGATTTGGTGGTCTCTGTATATGTAACTGCTGGTCATACGCGTTTGATGTTGCTTCATG
ACTCCCGCAATGATGATGGAATCAAGAGCTTATTTCAAGAGGTTCATGAGCTTTACATAAAGGATCATTTGACGAAGAAGATTAATGGTAGGGGACATGAAGTTGGGGGT
CTTTACATCTTGGATCAGCAACAAGTCCAAGCTGTAGCATGTTCAACACTATGTCTGTGTTCAAGGTCCATTATCGGTTGGGTCACCCATCGTTGGCCGTCTTGAAGAAG
TTATTTCTAGAGTATAATAAGTTGTCGTCTTTAAATTACTATACTTAATCCCCTCTACTTACCTGGATCCCGCATCACTTCTTCGCATTTCGACACAAAAGTCCGTGCAC
TTGCAAGGAAGTATCTCTAGCGTTCACCTTGATTGCAGGCCAAATTTTCTTTGTGACAAGATAATAAGTTTCGAAGTTTACAGCAGCCTTGTGTTTTCTACATTTGCATA
ACATTTTGACCTTTTGTATTTGTGAACCGTTAGTTGATTAATGTCTGGACCACCTCCAAGGATTTTGATTCTTACTCCATCCAGCATATCTTTTTGAACTGGGATGTTTA
TTTTTTCTAAATCTAGTCCTGTGTTGTATGCTTGTTTCTCTGCTCTTTGTCTAGATATTTATATGTTTTTTACTTTTTATCTTTTTGTTTCCCTTCGTAACAATTTTCAT
TCATTTTCTTAATGAATAAGAA
Protein sequenceShow/hide protein sequence
MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVHELYIKDHLTK
KINGRGHEVGGLYILDQQQVQAVACSTLCLCSRSIIGWVTHRWPS