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Sed0018247 (gene) of Chayote v1 genome

Gene IDSed0018247
OrganismSechium edule (Chayote v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG02:10279026..10281316
RNA-Seq ExpressionSed0018247
SyntenySed0018247
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032265.1 MuDRA-like transposase [Cucumis melo var. makuwa]3.7e-4055.8Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+D    FLV L+  SC+C  WDL EIPC+HAL  IC+L+LNPY FV ++YY+  L  TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPSIGE    ++CSRC RVGHN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]2.0e-3854.35Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+D    FLV L+  SC+C  WDL+EIPC+HAL  I +L+LNPY FVS++YY+  L+ TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPSIGE     +CSRC R  HN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]7.0e-3955.07Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+D    FLV L+  SC+C  WDL+EIPC+HAL  I +L+LNPY FVS++YY+  L+ TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPSIGE     +CSRC R GHN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

XP_008467000.1 PREDICTED: uncharacterized protein LOC103504407, partial [Cucumis melo]3.1e-3955.32Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V++I++ E +VI+   QF+V LD +SCTCRVWDLD+IPC+HALA +    +N Y+FVS+++ S+TL +TY G VRPVGNH +W SI ++ + LPP  KR+
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAVQ
         G+ +KQRI SIGE +S+ RCS CHR GHN R CKF P +Q
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAVQ

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]4.5e-4664.29Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        VD I+N E+KVID  N FLVNL  +SC+CRVWDL EIPC+HA A IC L+L+ YTFV ++Y+ +TL +TY+G V P+GNH  W SI V V+ LPPI+KR 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAV
        VGRPRKQRI SIGE +   +CSRCHR GHNCRTCKF P V
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAV

TrEMBL top hitse value%identityAlignment
A0A1S3CSI6 uncharacterized protein LOC1035044071.5e-3955.32Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V++I++ E +VI+   QF+V LD +SCTCRVWDLD+IPC+HALA +    +N Y+FVS+++ S+TL +TY G VRPVGNH +W SI ++ + LPP  KR+
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAVQ
         G+ +KQRI SIGE +S+ RCS CHR GHN R CKF P +Q
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAVQ

A0A5A7SST5 MuDRA-like transposase1.8e-4055.8Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+D    FLV L+  SC+C  WDL EIPC+HAL  IC+L+LNPY FV ++YY+  L  TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPSIGE    ++CSRC RVGHN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

A0A5A7TGH6 SWIM-type domain-containing protein2.2e-3854.35Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+DE   FLV L+  SC+C  WDL++IPC HAL  I +L+LNPY FVS +YY+  L  TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPS GE     +CSRC R GHN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

A0A5D3BD68 SWIM-type domain-containing protein9.8e-3954.35Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+D    FLV L+  SC+C  WDL+EIPC+HAL  I +L+LNPY FVS++YY+  L+ TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPSIGE     +CSRC R  HN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

A0A5D3BVP4 SWIM-type domain-containing protein3.4e-3955.07Show/hide
Query:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ
        V+ +S  E +V+D    FLV L+  SC+C  WDL+EIPC+HAL  I +L+LNPY FVS++YY+  L+ TY GLVRP+GNH  WS + V+ + LPP+ +R 
Subjt:  VDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSWSSIIVDVHALPPIMKRQ

Query:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP
         GRPRK+RIPSIGE     +CSRC R GHN RTC+F P
Subjt:  VGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase1.3e-0634.15Show/hide
Query:  DSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSW
        DS   SE     E  +++V L+  +CTCR +   + PC HALA    L +NP  +V E Y       TY     PV +  +W
Subjt:  DSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLVRPVGNHHSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGAGATGGAATGCAAATGTTTAAGACTCCCAGATCCAGCAATAGAGCAATTGAGTTTCAATGTTGCAAAGATGATTGTTTGTGGAATTTAAGCTTAAAGCACGT
TGATTCTATCAGCAATTCAGAACATAAAGTAATTGACGAGATTAATCAGTTTTTGGTTAACCTTGATACTCGGTCATGTACCTGCCGTGTTTGGGATCTCGATGAAATTC
CATGCTCTCATGCACTTGCTGCTATATGTGCACTGGATTTGAATCCTTATACTTTTGTATCTGAATTTTATTATTCTAATACTTTGGCAACAACTTATAGAGGGTTAGTT
CGTCCGGTTGGAAATCATCATAGTTGGAGCTCTATAATTGTCGATGTTCATGCTTTACCTCCAATTATGAAACGCCAAGTTGGAAGGCCTCGCAAACAAAGGATACCATC
TATAGGTGAAGCAAGGAGTTACGTAAGGTGTAGTCGTTGTCATCGAGTTGGACATAATTGTAGAACTTGTAAATTTGCTCCTGCTGTACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGAGATGGAATGCAAATGTTTAAGACTCCCAGATCCAGCAATAGAGCAATTGAGTTTCAATGTTGCAAAGATGATTGTTTGTGGAATTTAAGCTTAAAGCACGT
TGATTCTATCAGCAATTCAGAACATAAAGTAATTGACGAGATTAATCAGTTTTTGGTTAACCTTGATACTCGGTCATGTACCTGCCGTGTTTGGGATCTCGATGAAATTC
CATGCTCTCATGCACTTGCTGCTATATGTGCACTGGATTTGAATCCTTATACTTTTGTATCTGAATTTTATTATTCTAATACTTTGGCAACAACTTATAGAGGGTTAGTT
CGTCCGGTTGGAAATCATCATAGTTGGAGCTCTATAATTGTCGATGTTCATGCTTTACCTCCAATTATGAAACGCCAAGTTGGAAGGCCTCGCAAACAAAGGATACCATC
TATAGGTGAAGCAAGGAGTTACGTAAGGTGTAGTCGTTGTCATCGAGTTGGACATAATTGTAGAACTTGTAAATTTGCTCCTGCTGTACAATGA
Protein sequenceShow/hide protein sequence
MVGDGMQMFKTPRSSNRAIEFQCCKDDCLWNLSLKHVDSISNSEHKVIDEINQFLVNLDTRSCTCRVWDLDEIPCSHALAAICALDLNPYTFVSEFYYSNTLATTYRGLV
RPVGNHHSWSSIIVDVHALPPIMKRQVGRPRKQRIPSIGEARSYVRCSRCHRVGHNCRTCKFAPAVQ