; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0018253 (gene) of Chayote v1 genome

Gene IDSed0018253
OrganismSechium edule (Chayote v1)
DescriptionTCP family transcription factor
Genome locationLG03:14186249..14186883
RNA-Seq ExpressionSed0018253
SyntenySed0018253
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005333 - Transcription factor, TCP
IPR017887 - Transcription factor TCP subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604408.1 Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia]3.5e-5373.96Show/hide
Query:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----
        +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST+SPA ASS+PS     
Subjt:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----

Query:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE
        Q V   A E  MF M P PSC LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Subjt:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE

XP_022143970.1 transcription factor TCP11 [Momordica charantia]3.5e-5374.25Show/hide
Query:  PRKSAAA-----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPV
        PRKS +A     SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST S A ASS+PS     QPV
Subjt:  PRKSAAA-----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPV

Query:  ATVALE-MFTMP-PPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFREQ
             + MF MP PPPSC LDL +P+GM Y+A G+DYRHMPFTALLLQP+TA+  EE+QEEEVFR+Q
Subjt:  ATVALE-MFTMP-PPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFREQ

XP_022926085.1 transcription factor TCP11-like [Cucurbita moschata]6.1e-5373.96Show/hide
Query:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----
        +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST+SPA ASS+ S     
Subjt:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----

Query:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE
        Q V   A E  MF M PPPSC LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Subjt:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE

XP_023543697.1 transcription factor TCP11-like [Cucurbita pepo subsp. pepo]5.5e-5474.56Show/hide
Query:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----
        +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST+SPA ASS PS     
Subjt:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----

Query:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE
        Q V   A E  MF M PPPSC LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Subjt:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE

XP_038882900.1 transcription factor TCP11 [Benincasa hispida]7.9e-5375.45Show/hide
Query:  PPNAAPRKSAAA-SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QP
        P    PRKS  + SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST+SPA ASS+ S     QP
Subjt:  PPNAAPRKSAAA-SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QP

Query:  --VATVALEMFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE
          V      MF M PPPSC LDL +PVGM YSA G+DYRHMPFTALLLQP+TAE  EE+QEEEVFRE
Subjt:  --VATVALEMFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE

TrEMBL top hitse value%identityAlignment
A0A6J1CQB6 transcription factor TCP111.7e-5374.25Show/hide
Query:  PRKSAAA-----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPV
        PRKS +A     SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST S A ASS+PS     QPV
Subjt:  PRKSAAA-----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPV

Query:  ATVALE-MFTMP-PPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFREQ
             + MF MP PPPSC LDL +P+GM Y+A G+DYRHMPFTALLLQP+TA+  EE+QEEEVFR+Q
Subjt:  ATVALE-MFTMP-PPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFREQ

A0A6J1EK07 transcription factor TCP11-like2.9e-5373.96Show/hide
Query:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----
        +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST+SPA ASS+ S     
Subjt:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----

Query:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE
        Q V   A E  MF M PPPSC LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QEEEVFRE
Subjt:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE

A0A6J1HDU7 transcription factor TCP11-like1.2e-5173.21Show/hide
Query:  RKSAAA----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVAT
        RKS+ A    SS+DRHTKVNGRGRR+RMP LCAARIFQLT ELGHRSDGETI+WLLRQAEPSIIAATGTGT+PAAPISTVSP  ASS+PS     QPVA 
Subjt:  RKSAAA----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVAT

Query:  VAL----EMFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPAT---AEEEKQEEEVFREQ
         A      MF M PPPSC L+L +PVGM YSAGG DYR+MPFTALLLQPAT   AEE  + EE+FREQ
Subjt:  VAL----EMFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPAT---AEEEKQEEEVFREQ

A0A6J1IAL2 transcription factor TCP11-like7.2e-5274.25Show/hide
Query:  RKSAAA----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVAT
        RKS+ A    SS+DRHTKVNGRGRR+RMP LCAARIFQLT ELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPISTVSP  ASS+PS     QPVA 
Subjt:  RKSAAA----SSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----QPVAT

Query:  VALE---MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPAT---AEEEKQEEEVFREQ
         A     MF M PPPSC L+L +PVGM YSAGG DYR+MPFTALLLQPAT   AEE  + EE+FREQ
Subjt:  VALE---MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPAT---AEEEKQEEEVFREQ

A0A6J1IR93 transcription factor TCP11-like1.2e-5172.19Show/hide
Query:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----
        +  PRKS A     +SS+DRHTKVNGRGRR+RMP LCAARIFQLTRELGHRSDGETI+WLLRQAEPSIIAATGTGTVPAAPIST++PA ASS+PS     
Subjt:  NAAPRKSAA-----ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPS-----

Query:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE
        Q V   A E  MF M   PSC LDL +PVG+ YSA G+DYRHMPFTALLLQP+TA+  EE+QE EVFRE
Subjt:  QPVATVALE--MFTMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAE--EEKQEEEVFRE

SwissProt top hitse value%identityAlignment
O64647 Transcription factor TCP91.5e-2571.95Show/hide
Query:  LHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS
        L PP++       AS+KDRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI+WLL  AEP+IIAATGTGTVPA  +S
Subjt:  LHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS

Q93Z00 Transcription factor TCP141.5e-2572.62Show/hide
Query:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS-TVSPATASSSPSQP
        AS+KDRHTKV+GRGRR+RMP LCAAR+FQLTRELGH+SDGETI+WLL+QAEPS+IAATGTGT+PA   S  +S  ++ SS S P
Subjt:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS-TVSPATASSSPSQP

Q9C9L2 Transcription factor TCP153.8e-2672.73Show/hide
Query:  PNAAPRK--SAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPA
        PN+ P+K      S+KDRHTKV GRGRR+RMP +CAAR+FQLTRELGH+SDGETI+WLL+QAEP++IAATGTGT+PA
Subjt:  PNAAPRK--SAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPA

Q9LSD5 Transcription factor TCP206.6e-2676.62Show/hide
Query:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATAS
        +S+KDRHTKV GRGRR+RMP LCAARIFQLTRELGH+SDGETIQWLL+QAEPSIIAATG+GT+PA+ +++ S AT++
Subjt:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATAS

Q9SJK7 Transcription factor TCP113.0e-3154.05Show/hide
Query:  AASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPS
        +A +KDRHTKVNGR RR+ MP L AARIFQLTRELGH+++GETI+WLL QAEPSIIAATG GT     IS      A  S S    T        P  PS
Subjt:  AASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPS

Query:  CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAEEEKQEEEVFREQ
        C LDL +P+G+ Y   G  Y HMPFTA+LL+P T   E + E    E+
Subjt:  CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAEEEKQEEEVFREQ

Arabidopsis top hitse value%identityAlignment
AT1G69690.1 TCP family transcription factor2.7e-2772.73Show/hide
Query:  PNAAPRK--SAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPA
        PN+ P+K      S+KDRHTKV GRGRR+RMP +CAAR+FQLTRELGH+SDGETI+WLL+QAEP++IAATGTGT+PA
Subjt:  PNAAPRK--SAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPA

AT2G37000.1 TCP family transcription factor2.2e-3254.05Show/hide
Query:  AASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPS
        +A +KDRHTKVNGR RR+ MP L AARIFQLTRELGH+++GETI+WLL QAEPSIIAATG GT     IS      A  S S    T        P  PS
Subjt:  AASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPSQPVATVALEMFTMPPPPS

Query:  CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAEEEKQEEEVFREQ
        C LDL +P+G+ Y   G  Y HMPFTA+LL+P T   E + E    E+
Subjt:  CHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAEEEKQEEEVFREQ

AT2G45680.1 TCP family transcription factor1.0e-2671.95Show/hide
Query:  LHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS
        L PP++       AS+KDRHTKV GRGRR+RMP  CAARIFQLTRELGH+SDGETI+WLL  AEP+IIAATGTGTVPA  +S
Subjt:  LHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS

AT3G27010.1 TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 204.7e-2776.62Show/hide
Query:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATAS
        +S+KDRHTKV GRGRR+RMP LCAARIFQLTRELGH+SDGETIQWLL+QAEPSIIAATG+GT+PA+ +++ S AT++
Subjt:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATAS

AT3G47620.1 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 141.0e-2672.62Show/hide
Query:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS-TVSPATASSSPSQP
        AS+KDRHTKV+GRGRR+RMP LCAAR+FQLTRELGH+SDGETI+WLL+QAEPS+IAATGTGT+PA   S  +S  ++ SS S P
Subjt:  ASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPIS-TVSPATASSSPSQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACCGGAGATCCTTCATCCTCCCAACGCCGCCCCTCGAAAATCCGCCGCCGCCTCATCGAAGGACCGCCACACCAAGGTCAACGGCAGAGGGCGGCGCCTCCGCAT
GCCGCCCCTCTGCGCCGCCCGGATCTTTCAGTTGACGCGCGAGCTTGGCCACCGCTCCGACGGCGAGACCATCCAGTGGCTTCTCCGTCAGGCCGAGCCATCCATCATCG
CCGCCACCGGTACCGGCACCGTTCCCGCGGCTCCGATCTCCACTGTTTCTCCGGCCACGGCCTCGTCTTCTCCGTCGCAGCCGGTGGCGACCGTTGCGTTAGAGATGTTC
ACAATGCCGCCGCCGCCGAGCTGTCATTTGGATCTATCCCGGCCGGTCGGGATGGTGTACTCTGCCGGCGGGAGTGATTACCGGCACATGCCGTTTACTGCGTTGCTGTT
GCAGCCGGCGACGGCGGAGGAGGAGAAGCAGGAAGAGGAGGTTTTCAGAGAGCAATAG
mRNA sequenceShow/hide mRNA sequence
TTATTATACATTCATTTCTTCGTCTTCCTCATCCTTCCAACCCTAAAAACCTTCTCCTCCGATCAAAACCCTAACCACAAAATCCCCAAATCAAATCGCAACATTTCAAA
ACCCAACCATGGGACCGGAGATCCTTCATCCTCCCAACGCCGCCCCTCGAAAATCCGCCGCCGCCTCATCGAAGGACCGCCACACCAAGGTCAACGGCAGAGGGCGGCGC
CTCCGCATGCCGCCCCTCTGCGCCGCCCGGATCTTTCAGTTGACGCGCGAGCTTGGCCACCGCTCCGACGGCGAGACCATCCAGTGGCTTCTCCGTCAGGCCGAGCCATC
CATCATCGCCGCCACCGGTACCGGCACCGTTCCCGCGGCTCCGATCTCCACTGTTTCTCCGGCCACGGCCTCGTCTTCTCCGTCGCAGCCGGTGGCGACCGTTGCGTTAG
AGATGTTCACAATGCCGCCGCCGCCGAGCTGTCATTTGGATCTATCCCGGCCGGTCGGGATGGTGTACTCTGCCGGCGGGAGTGATTACCGGCACATGCCGTTTACTGCG
TTGCTGTTGCAGCCGGCGACGGCGGAGGAGGAGAAGCAGGAAGAGGAGGTTTTCAGAGAGCAATAGTGAAATCAGTATGGAAATT
Protein sequenceShow/hide protein sequence
MGPEILHPPNAAPRKSAAASSKDRHTKVNGRGRRLRMPPLCAARIFQLTRELGHRSDGETIQWLLRQAEPSIIAATGTGTVPAAPISTVSPATASSSPSQPVATVALEMF
TMPPPPSCHLDLSRPVGMVYSAGGSDYRHMPFTALLLQPATAEEEKQEEEVFREQ