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Sed0018265 (gene) of Chayote v1 genome

Gene IDSed0018265
OrganismSechium edule (Chayote v1)
Descriptionembryo-specific protein ATS3B-like
Genome locationLG06:33106897..33125969
RNA-Seq ExpressionSed0018265
SyntenySed0018265
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR010417 - Embryo-specific ATS3
IPR036392 - PLAT/LH2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK29565.1 embryo-specific protein ATS3A [Cucumis melo var. makuwa]7.2e-3252.02Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST
        ME  KK+TIS      +FSFSESSRSILH                 A  CSYTVTIKTS SSP                  VYVPR+DDPSSRAFE CST
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST

Query:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM
        D+++LKGPCTY +              +DKV I SYSSR SV +N+N+KIPN+VWFGFNFCSG+QA  S  AM
Subjt:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM

XP_004152204.1 embryo-specific protein ATS3B [Cucumis sativus]7.2e-3253.18Show/hide
Query:  MEIFKKSTISL------FSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST
        ME  KK+TISL      FSFS SSRSILH                 AG CSYTVTIKTS SSP                  VYVPR+DDPSSRAFE CST
Subjt:  MEIFKKSTISL------FSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST

Query:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM
        D+++LKGPCTY I              +DKV I SYSS KSV +N+N+KIPN+VWFGFNFCSG QA  S  AM
Subjt:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM

XP_022949508.1 embryo-specific protein ATS3B-like [Cucurbita moschata]1.9e-3250.57Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC
        ME FKK+TIS      LF FSESSRSIL +                  A  CSYTVTIKTS  SP                  VY+PR+DDPSSRAFE C
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC

Query:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA
        STDK++L GPCTYPI              +DKV IYSYSSR+SV YN+   IPN+VWFGFNFCSGY   V + A
Subjt:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA

XP_022998818.1 embryo-specific protein ATS3B-like [Cucurbita maxima]7.2e-3250Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC
        ME FKK+TIS      LF FSESSRSIL +                  A  CSYTVTIKTS +SP                  VY+PR+D+PSSRAFE C
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC

Query:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA
        STDK++L GPCTYPI              +DKV IYSYSSR+SV YN+   IPN+VWFGFNFCSGY   V + A
Subjt:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA

XP_023525938.1 embryo-specific protein ATS3B-like [Cucurbita pepo subsp. pepo]1.1e-3251.15Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC
        ME FKK+TIS      LF FSESSRSIL +                  A  CSYTVTIKTS  SP                  VY+PR+DDPSSRAFE C
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC

Query:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA
        STDK+EL GPCTYPI              +DKV IYSYSSR+SV YN+   IPN+VWFGFNFCSGY   V + A
Subjt:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA

TrEMBL top hitse value%identityAlignment
A0A0A0KYF3 FBA domain-containing protein3.5e-3253.18Show/hide
Query:  MEIFKKSTISL------FSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST
        ME  KK+TISL      FSFS SSRSILH                 AG CSYTVTIKTS SSP                  VYVPR+DDPSSRAFE CST
Subjt:  MEIFKKSTISL------FSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST

Query:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM
        D+++LKGPCTY I              +DKV I SYSS KSV +N+N+KIPN+VWFGFNFCSG QA  S  AM
Subjt:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM

A0A5A7TNJ2 Embryo-specific protein ATS3A3.5e-3252.02Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST
        ME  KK+TIS      +FSFSESSRSILH                 A  CSYTVTIKTS SSP                  VYVPR+DDPSSRAFE CST
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST

Query:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM
        D+++LKGPCTY +              +DKV I SYSSR SV +N+N+KIPN+VWFGFNFCSG+QA  S  AM
Subjt:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM

A0A5D3E2M7 Embryo-specific protein ATS3A3.5e-3252.02Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST
        ME  KK+TIS      +FSFSESSRSILH                 A  CSYTVTIKTS SSP                  VYVPR+DDPSSRAFE CST
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY----------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHCST

Query:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM
        D+++LKGPCTY +              +DKV I SYSSR SV +N+N+KIPN+VWFGFNFCSG+QA  S  AM
Subjt:  DKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVAM

A0A6J1GCA3 embryo-specific protein ATS3B-like9.2e-3350.57Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC
        ME FKK+TIS      LF FSESSRSIL +                  A  CSYTVTIKTS  SP                  VY+PR+DDPSSRAFE C
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC

Query:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA
        STDK++L GPCTYPI              +DKV IYSYSSR+SV YN+   IPN+VWFGFNFCSGY   V + A
Subjt:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA

A0A6J1KHT8 embryo-specific protein ATS3B-like3.5e-3250Show/hide
Query:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC
        ME FKK+TIS      LF FSESSRSIL +                  A  CSYTVTIKTS +SP                  VY+PR+D+PSSRAFE C
Subjt:  MEIFKKSTIS------LFSFSESSRSILHY------------------AGRCSYTVTIKTSYSSP------------------VYVPRMDDPSSRAFEHC

Query:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA
        STDK++L GPCTYPI              +DKV IYSYSSR+SV YN+   IPN+VWFGFNFCSGY   V + A
Subjt:  STDKFELKGPCTYPI--------------LDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGYQADVSAVA

SwissProt top hitse value%identityAlignment
Q681K2 Embryo-specific protein ATS3A2.2e-1539.17Show/hide
Query:  LHYAGRCSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVA
        L  A  CSYTV IKTS                  Y + VYV R+DDPSSR FE CS+D +++ GPC   +               + V IY  SS +SV 
Subjt:  LHYAGRCSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVA

Query:  YNFNTKIPNNVWFGFNFCSG
        + +N  +PN+VW+GFN C+G
Subjt:  YNFNTKIPNNVWFGFNFCSG

Q6NPM5 Embryo-specific protein ATS3B1.5e-1636.8Show/hide
Query:  CSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVAYNFNTK
        C+YTV I TS                  Y + +Y PR+DDPS++ FE CS+D F++ GPCTY I               + V IYS+ S K+V + +NT 
Subjt:  CSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVAYNFNTK

Query:  IPNNVWFGFNFC-SGYQADVSAVAM
        +P +VW+GFN+C S   ++V A+ +
Subjt:  IPNNVWFGFNFC-SGYQADVSAVAM

Arabidopsis top hitse value%identityAlignment
AT2G41475.1 Embryo-specific protein 3, (ATS3)1.6e-1639.17Show/hide
Query:  LHYAGRCSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVA
        L  A  CSYTV IKTS                  Y + VYV R+DDPSSR FE CS+D +++ GPC   +               + V IY  SS +SV 
Subjt:  LHYAGRCSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVA

Query:  YNFNTKIPNNVWFGFNFCSG
        + +N  +PN+VW+GFN C+G
Subjt:  YNFNTKIPNNVWFGFNFCSG

AT5G62200.1 Embryo-specific protein 3, (ATS3)1.1e-1736.8Show/hide
Query:  CSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVAYNFNTK
        C+YTV I TS                  Y + +Y PR+DDPS++ FE CS+D F++ GPCTY I               + V IYS+ S K+V + +NT 
Subjt:  CSYTVTIKTS------------------YSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKSVAYNFNTK

Query:  IPNNVWFGFNFC-SGYQADVSAVAM
        +P +VW+GFN+C S   ++V A+ +
Subjt:  IPNNVWFGFNFC-SGYQADVSAVAM

AT5G62210.1 Embryo-specific protein 3, (ATS3)1.7e-1033.88Show/hide
Query:  LHYAGRCSYTVTIKTSYSSP------------------VYVPRMDDPSS--RAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKS
        LH    C YTV + TS  SP                  V  PR+D P S    FE CS+D F++KG C   I               + V IY   S KS
Subjt:  LHYAGRCSYTVTIKTSYSSP------------------VYVPRMDDPSS--RAFEHCSTDKFELKGPCTYPIL--------------DKVAIYSYSSRKS

Query:  VAYNFNTKIPNNVWFGFNFCS
        V ++FN  +P N+W+G N+C+
Subjt:  VAYNFNTKIPNNVWFGFNFCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCTTCAAGAAATCAACCATTTCTCTCTTCAGCTTCTCAGAATCTTCAAGATCTATCCTTCATTATGCTGGGAGATGTTCTTACACGGTGACAATTAAAACAAG
CTATTCTTCGCCTGTATACGTACCGAGGATGGACGACCCATCTTCAAGGGCGTTTGAGCACTGCTCAACAGACAAATTCGAGTTAAAGGGACCATGCACATACCCGATAT
TGGACAAAGTAGCCATCTATAGTTATTCTTCAAGAAAATCCGTTGCGTATAATTTCAACACGAAGATCCCGAACAATGTCTGGTTTGGTTTCAATTTCTGCTCTGGGTAT
CAAGCTGATGTATCTGCTGTGGCAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCTTCAAGAAATCAACCATTTCTCTCTTCAGCTTCTCAGAATCTTCAAGATCTATCCTTCATTATGCTGGGAGATGTTCTTACACGGTGACAATTAAAACAAG
CTATTCTTCGCCTGTATACGTACCGAGGATGGACGACCCATCTTCAAGGGCGTTTGAGCACTGCTCAACAGACAAATTCGAGTTAAAGGGACCATGCACATACCCGATAT
TGGACAAAGTAGCCATCTATAGTTATTCTTCAAGAAAATCCGTTGCGTATAATTTCAACACGAAGATCCCGAACAATGTCTGGTTTGGTTTCAATTTCTGCTCTGGGTAT
CAAGCTGATGTATCTGCTGTGGCAATGTAG
Protein sequenceShow/hide protein sequence
MEIFKKSTISLFSFSESSRSILHYAGRCSYTVTIKTSYSSPVYVPRMDDPSSRAFEHCSTDKFELKGPCTYPILDKVAIYSYSSRKSVAYNFNTKIPNNVWFGFNFCSGY
QADVSAVAM