CuGenDBv2

Gene ID	Sed0018322
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Genome location	LG01:18775257..18778326
RNA-Seq Expression	Sed0018322
Synteny	Sed0018322
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591283.1 hypothetical protein SDJN03_13629, partial [Cucurbita argyrosperma subsp. sororia]

9.7e-59

93.7

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVE+VFDATSTP QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELNQP PSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

4.4e-59

92.13

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVE+VFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WP++IPE+EL QP PSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

XP_022940323.1 uncharacterized protein LOC111445972 [Cucurbita moschata]

2.0e-59

92.13

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVE+VFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELN PPPSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

1.5e-59

92.91

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVE+VFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELNQP PSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

XP_022982466.1 uncharacterized protein LOC111481279 [Cucurbita maxima]

1.5e-59

92.91

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVE+VFDATSTPAQTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELN PPPSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

4.4e-57

90.55

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQIAVTFVNGVE+VFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
        AWPVIIP++EL QP   IKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

A0A6J1CC86 uncharacterized protein LOC111010210

2.1e-59

92.13

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVE+VFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WP++IPE+EL QP PSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

A0A6J1FNY6 uncharacterized protein LOC111445972

9.5e-60

92.13

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVE+VFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELN PPPSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

7.2e-60

92.91

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVE+VFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELNQP PSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

A0A6J1IZE5 uncharacterized protein LOC111481279

7.2e-60

92.91

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNA+DPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVE+VFDATSTPAQTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++ELN PPPSIKPRKAE+KQ
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

1.1e-52

77.17

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Query:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN +DPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI VTFVNGVE+ FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  AWPVIIPEDELNQPPPSIKPRKAEEKQ
         WPVIIP++EL Q  P +KPRKAE+K+
Subjt:  AWPVIIPEDELNQPPPSIKPRKAEEKQ

Sequences

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CDS sequence

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ATGTTGAAGTTCCTGTCCAAAGTGAAGATCGAATTCAATGCCATGGATCCACGCTTAGCGTCTTGCATGGAGTTCTTGGCGCAGTGCAATGCTCGCAAGGCCAAGGAATC
CAACCCCGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAACAGGTTTTCGACGCTACTTCCACTC
CCGCCCAGACGATCAGGAACATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAGATGTTCCGAGAAGCTGGAGAAGCTTGGCCGGTTATCATTCCCGAAGACGAG
CTTAATCAACCTCCTCCCAGTATTAAGCCTAGAAAAGCGGAAGAGAAGCAGTAA

mRNA sequence

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CGCACCGTTTCGTCAAAAACCCCCCAAAGAAAAGGCAGCGCCAGAGTCTTCTTCTCGAAACTAGGGGTTGAGGCGAAAGGAATAAGCAGCGATGTTGAAGTTCCTGTCCA
AAGTGAAGATCGAATTCAATGCCATGGATCCACGCTTAGCGTCTTGCATGGAGTTCTTGGCGCAGTGCAATGCTCGCAAGGCCAAGGAATCCAACCCCGCTTGCCAGTTG
ATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAACAGGTTTTCGACGCTACTTCCACTCCCGCCCAGACGATCAGGAA
CATGATTCTTGAAAAGGGTCAACTCCTTGAGACCGAGCAGATGTTCCGAGAAGCTGGAGAAGCTTGGCCGGTTATCATTCCCGAAGACGAGCTTAATCAACCTCCTCCCA
GTATTAAGCCTAGAAAAGCGGAAGAGAAGCAGTAACTCTTTGTCTCTCAATTGATCAAATTACGGATGTGCCTGAAAAAGAGGGAGTGCATACTACTGTCCTCACAATAA
TAATAGAATCAATTTCTGTGAAGTAAAAGTGCTGATTCTGAGATTGTTTTTTGTTCTATATTTCCTAGGGATGTTTGCTAGTTTTTTTGCTTCTTAGATGTGAAAGAATT
CCCCATCAAGTTCTAAACATGGTCTGTGGATTTTCATGAGCCATTTATTTATGTGATCTTGTTACCAATATTTGCTTTGTATGAGTTTGAAATTCACTCCGCCAAGACTT
CAAACTTTCACTTTGTTTTAGCTCAACTACAATATCTAGTGATTCGAATCCTTGACCTCTTGGTCAAAG

Protein sequence

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MLKFLSKVKIEFNAMDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEQVFDATSTPAQTIRNMILEKGQLLETEQMFREAGEAWPVIIPEDE
LNQPPPSIKPRKAEEKQ

Sed0018322 (gene) of Chayote v1 genome