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Sed0018324 (gene) of Chayote v1 genome

Gene IDSed0018324
OrganismSechium edule (Chayote v1)
DescriptionRecombination protein like
Genome locationLG05:26073602..26074347
RNA-Seq ExpressionSed0018324
SyntenySed0018324
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048367.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa]2.6e-3465.87Show/hide
Query:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS
        MAALSAGHRH F    G A VQ RNRS +PRS A+LC  + +PS       E+  KK +ERKE ++GFV+R EKMG++LKEKL P RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS

Query:  FAVYVYISQKLVCAYCLWMAMPKQVW
        FAVYVYISQK+VCAY LWM+MPK +W
Subjt:  FAVYVYISQKLVCAYCLWMAMPKQVW

KAG6581569.1 hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3265.83Show/hide
Query:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSH-----EPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVY
        MAALSAGHRH F   AVQ  NRS +PR   LLC  +H     + SEEK KK +E K+ + GF++R +KMG+ELKEKL P RKGDWKD+TLMSLSFAVYVY
Subjt:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSH-----EPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVY

Query:  ISQKLVCAYCLWMAMPKQVW
        ISQK+VCAY LWM+MPKQ+W
Subjt:  ISQKLVCAYCLWMAMPKQVW

KAG6606884.1 hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3670.25Show/hide
Query:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSH------EPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYV
        MAALSAGHR+ FG AAV  RNRS +PRS  LLC  +       +PSEEK KK +E+K+ I GFV+R EKMG+ELKEKL P RKGDWKDLTLMSLSFAVYV
Subjt:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSH------EPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYV

Query:  YISQKLVCAYCLWMAMPKQVW
        YISQK+VCAY +WM+MPKQVW
Subjt:  YISQKLVCAYCLWMAMPKQVW

KGN58582.1 hypothetical protein Csa_001602 [Cucumis sativus]8.3e-3363.49Show/hide
Query:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS
        MAALSAGHRH F    G A +  RNRS +PRS ++LC  + +PS       E+  KK +ERKE ++GFV+R EKMG++LKEKL P RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS

Query:  FAVYVYISQKLVCAYCLWMAMPKQVW
        FAVYVYISQK+VCAY LWM MPK +W
Subjt:  FAVYVYISQKLVCAYCLWMAMPKQVW

XP_022152649.1 uncharacterized protein LOC111020315 [Momordica charantia]1.2e-3472.41Show/hide
Query:  MAALSAGHRHLF--GGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERK-ERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYIS
        MAALSAGHRH F  G AA QLR R S+P+S  LLCR S +PSEE +K+ EERK ++I GFVER EKMG+ELKEKL P RKGDWKD+ LMSLSFAVYVYIS
Subjt:  MAALSAGHRHLF--GGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERK-ERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYIS

Query:  QKLVCAYCLWMAMPKQ
        QK+VCAY +WM+MPKQ
Subjt:  QKLVCAYCLWMAMPKQ

TrEMBL top hitse value%identityAlignment
A0A0A0LD14 Uncharacterized protein4.0e-3363.49Show/hide
Query:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS
        MAALSAGHRH F    G A +  RNRS +PRS ++LC  + +PS       E+  KK +ERKE ++GFV+R EKMG++LKEKL P RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS

Query:  FAVYVYISQKLVCAYCLWMAMPKQVW
        FAVYVYISQK+VCAY LWM MPK +W
Subjt:  FAVYVYISQKLVCAYCLWMAMPKQVW

A0A5D3BX35 Putative RNA/RNP complex-1-interacting phosphatase1.2e-3465.87Show/hide
Query:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS
        MAALSAGHRH F    G A VQ RNRS +PRS A+LC  + +PS       E+  KK +ERKE ++GFV+R EKMG++LKEKL P RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHLF----GGAAVQLRNRSSNPRSRALLCRRSHEPS-------EEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLS

Query:  FAVYVYISQKLVCAYCLWMAMPKQVW
        FAVYVYISQK+VCAY LWM+MPK +W
Subjt:  FAVYVYISQKLVCAYCLWMAMPKQVW

A0A660KVF0 Uncharacterized protein2.1e-1849.58Show/hide
Query:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVER----LEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYI
        MAALS GH         Q   +SS+P +  L C + H+P +    + ++ K +    ++R     EK G  L+E L P +KGDWKDLTLMSLSFAVYVYI
Subjt:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVER----LEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYI

Query:  SQKLVCAYCLWMAMPKQVW
        SQKLVCAY  WM+MPKQ+W
Subjt:  SQKLVCAYCLWMAMPKQVW

A0A6J1DGN1 uncharacterized protein LOC1110203155.6e-3572.41Show/hide
Query:  MAALSAGHRHLF--GGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERK-ERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYIS
        MAALSAGHRH F  G AA QLR R S+P+S  LLCR S +PSEE +K+ EERK ++I GFVER EKMG+ELKEKL P RKGDWKD+ LMSLSFAVYVYIS
Subjt:  MAALSAGHRHLF--GGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERK-ERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYIS

Query:  QKLVCAYCLWMAMPKQ
        QK+VCAY +WM+MPKQ
Subjt:  QKLVCAYCLWMAMPKQ

A0A6P9E117 uncharacterized protein LOC1183445077.3e-1950Show/hide
Query:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSHEP---SEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYIS
        MAAL  GH        +Q   + S+PR+  LL  +SH+P   S  + KK   R+  + G +    K G  LKE + P +KGDWKD+ LMSLSFAVYVYIS
Subjt:  MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSHEP---SEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYIS

Query:  QKLVCAYCLWMAMPKQVW
        QK+VCAYC WM+MPKQ W
Subjt:  QKLVCAYCLWMAMPKQVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52070.1 unknown protein5.8e-0840Show/hide
Query:  QLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYISQKLVCAYCLW--MAMPKQVW
        Q  +R      R + CR+   P E +       +      +    K+G  LK +    +KGD KDL LMSLSFAVYVYISQ LVCAY  W  ++ PK  W
Subjt:  QLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYISQKLVCAYCLW--MAMPKQVW

AT3G52070.2 unknown protein3.7e-0740.21Show/hide
Query:  QLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYISQKLVCAYCLW--MAMPK
        Q  +R      R + CR+   P E +       +      +    K+G  LK +    +KGD KDL LMSLSFAVYVYISQ LVCAY  W  ++ PK
Subjt:  QLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYISQKLVCAYCLW--MAMPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTCTCTCCGCCGGGCACCGCCACTTGTTCGGCGGCGCCGCCGTGCAGCTCAGAAACAGATCCAGCAACCCCAGATCGAGGGCCCTCCTGTGCCGCCGTAGCCA
CGAGCCTTCGGAAGAAAAGGCGAAGAAAATGGAAGAGAGAAAAGAGAGGATTTATGGGTTTGTGGAGAGATTAGAGAAGATGGGGTTGGAATTAAAGGAGAAATTGAGGC
CTCACAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTTTATATTTCTCAGAAGCTTGTTTGTGCTTATTGTCTTTGGATGGCAATG
CCCAAACAAGTCTGGTAG
mRNA sequenceShow/hide mRNA sequence
AAAATCCACACAAAAGAAGTTAGTTGCAAAAGTTGCCAAAATTCCCAAGATATTTTAGTCTACACACAACACAACAAGAATTATCCATTTGTTTCCCCAATTTATTAAAA
TTCCCCTCTCATTACCCACAAAATATCTCCAATTACAAACGCTCCCTTCCATTTCCATGGCAGCTCTCTCCGCCGGGCACCGCCACTTGTTCGGCGGCGCCGCCGTGCAG
CTCAGAAACAGATCCAGCAACCCCAGATCGAGGGCCCTCCTGTGCCGCCGTAGCCACGAGCCTTCGGAAGAAAAGGCGAAGAAAATGGAAGAGAGAAAAGAGAGGATTTA
TGGGTTTGTGGAGAGATTAGAGAAGATGGGGTTGGAATTAAAGGAGAAATTGAGGCCTCACAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTG
TTTATGTTTATATTTCTCAGAAGCTTGTTTGTGCTTATTGTCTTTGGATGGCAATGCCCAAACAAGTCTGGTAGAAGATTATGGATTTCAAACGGGGCTTCATCACATCT
CTTTTCTTGTGGATTCTATCATTGCTGTTTTGTTTCAAATTTGTGTATCATAAGTTTGGATATTTATATCAATTCCACTTTTATTTAGTTCAAGAACAATATTTTACCTT
ATGATTACATCAATTCAGTTGTTCATAGTTTTATTTGGTTAAATTATATTTTCAATATGATATAATTACATCTCCATAGGATTCCA
Protein sequenceShow/hide protein sequence
MAALSAGHRHLFGGAAVQLRNRSSNPRSRALLCRRSHEPSEEKAKKMEERKERIYGFVERLEKMGLELKEKLRPHRKGDWKDLTLMSLSFAVYVYISQKLVCAYCLWMAM
PKQVW