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Sed0018343 (gene) of Chayote v1 genome

Gene IDSed0018343
OrganismSechium edule (Chayote v1)
DescriptionCoiled-coil domain-containing protein 86
Genome locationLG03:6058159..6061124
RNA-Seq ExpressionSed0018343
SyntenySed0018343
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsIPR005579 - Cgr1-like
IPR026570 - Coiled-coil domain-containing protein 86


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016626.1 hypothetical protein SDJN02_21736, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-7585.86Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML
        MACT+DFRRLDEGFGGKTYKRKR EEA +SLNI  SEN A A+MD+D+SL PP KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHRTSAML
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML

Query:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLKWRKSNLIDD-IFAID
        VSRKGTTFEERERQKMIKAA+RERKEELKEQIRSNKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK    + I + +FA D
Subjt:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLKWRKSNLIDD-IFAID

XP_022141739.1 protein PXR1 [Momordica charantia]2.2e-7690.22Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKRE-EEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM
        MACT+DFR LDEGFGGKTYKRKRE EEA NSLNI DSEN A A+M+ID+S PPP+KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHR SAM
Subjt:  MACTVDFRRLDEGFGGKTYKRKRE-EEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM

Query:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
         VSRKGTTFEERE+QKMIKAAFRERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

XP_022939634.1 protein PXR1 [Cucurbita moschata]1.9e-7590.71Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML
        MACT+DFRRLDEGFGGKTYKRKR EEA +SLNI  SEN A A+MD+D+SL PP KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHRTSAML
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML

Query:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
        VSRKGTTFEERERQKMIKAA+RERKEELKEQIRSNKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

XP_022992739.1 protein PXR1 [Cucurbita maxima]1.9e-7590.71Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML
        MACT+DFRRLDEGFGGKTYKRKR EEA +SLNI  SEN A A+MD+D+SL PP KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHRTSAML
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML

Query:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
        VSRKGTTFEERERQKMIKAA+RERKEELKEQIRSNKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

XP_038874831.1 protein PXR1 [Benincasa hispida]2.2e-7691.26Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML
        MACT+DFRRLDEGFGGKTYKRKR EEA  SLNIT+SEN A  +M+IDDSLPPPSKRSA+PSSENPDKPTF NPTYDGVIAGKVSGR WKQPRKHRTSAM 
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML

Query:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
        VSRKGTTFEERERQK IKAAFRERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

TrEMBL top hitse value%identityAlignment
A0A1S3CP36 Coiled-coil domain-containing protein 863.4e-7590.22Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSL-PPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM
        MACT+DFRRLDEGFGGKTYKRKR EEA  SL IT+SEN A  AM+IDDSL PPP+KRSA+PSSENPDKPT+GNPTYDGVIAGKVSGR WKQPRKHRTSAM
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSL-PPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM

Query:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
         VSRKGTTFEERERQKMIKAAF+ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

A0A5D3BKZ5 Coiled-coil domain-containing protein 863.4e-7590.22Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSL-PPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM
        MACT+DFRRLDEGFGGKTYKRKR EEA  SL IT+SEN A  AM+IDDSL PPP+KRSA+PSSENPDKPT+GNPTYDGVIAGKVSGR WKQPRKHRTSAM
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSL-PPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM

Query:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
         VSRKGTTFEERERQKMIKAAF+ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

A0A6J1CIY7 Coiled-coil domain-containing protein 861.1e-7690.22Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKRE-EEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM
        MACT+DFR LDEGFGGKTYKRKRE EEA NSLNI DSEN A A+M+ID+S PPP+KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHR SAM
Subjt:  MACTVDFRRLDEGFGGKTYKRKRE-EEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAM

Query:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
         VSRKGTTFEERE+QKMIKAAFRERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  LVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

A0A6J1FHS9 Coiled-coil domain-containing protein 869.0e-7690.71Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML
        MACT+DFRRLDEGFGGKTYKRKR EEA +SLNI  SEN A A+MD+D+SL PP KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHRTSAML
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML

Query:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
        VSRKGTTFEERERQKMIKAA+RERKEELKEQIRSNKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

A0A6J1JYC3 Coiled-coil domain-containing protein 869.0e-7690.71Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML
        MACT+DFRRLDEGFGGKTYKRKR EEA +SLNI  SEN A A+MD+D+SL PP KRSA+PSSENPDKPTFGNPTYDGVIAGKVSGR WKQPRKHRTSAML
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAML

Query:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
        VSRKGTTFEERERQKMIKAA+RERKEELKEQIRSNKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK
Subjt:  VSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G31410.1 unknown protein1.8e-5266.84Show/hide
Query:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKP---TFGNPTYDGVIAGKVSGRNWKQPRKHRTS
        MACTVDFR LDEGFGGKTYKRKRE +   +      E    A+MDID + PP +KRSAV SSENPDKP       PTYDGVIAGKVSGRNWKQPR HR+S
Subjt:  MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKP---TFGNPTYDGVIAGKVSGRNWKQPRKHRTS

Query:  AMLVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKS-KQKKLLK
           V  +    EE +RQ+ IK A++ER  ELKE+IRSNKVEKRKK+EEREK+KKEN+LR+GTKLQKITNPKTLKKI+ S KQ+K LK
Subjt:  AMLVSRKGTTFEERERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKS-KQKKLLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTGCACCGTCGACTTCCGGCGCCTGGACGAGGGTTTCGGGGGAAAAACCTACAAGAGAAAGCGCGAAGAAGAAGCTCACAACAGCCTCAACATCACCGACTCCGA
AAATGCCGCCGCCGCCGCCATGGACATCGACGACTCGCTTCCGCCGCCGTCCAAGCGATCCGCGGTTCCTTCGTCGGAAAATCCTGACAAACCGACGTTCGGAAACCCTA
CGTACGACGGCGTTATCGCCGGAAAGGTCTCCGGGCGGAACTGGAAGCAGCCGCGGAAGCACAGGACGTCGGCGATGCTGGTGAGCCGGAAAGGCACCACGTTCGAGGAG
AGGGAGAGGCAGAAGATGATCAAGGCGGCGTTTCGGGAGCGGAAGGAGGAGTTGAAGGAGCAGATTAGGTCAAACAAGGTGGAGAAGAGGAAGAAGAGGGAAGAAAGAGA
GAAGAAGAAGAAGGAGAACATTTTGAGGTCGGGAACTAAGCTACAGAAGATCACGAATCCCAAGACATTGAAGAAGATCGCCAAATCCAAGCAGAAGAAACTCCTCAAGT
GGAGGAAATCAAATCTAATAGATGATATTTTTGCTATTGATTTTAGCTTCGAAATTGAAGTATACTATTTTACCATCAGAATTGTGAACTTCAATTTTCATACACAAATT
ACTGACGATGCTTTCTCATATCTCATAGCTAAATCTCATGAAATCATCAATTGGGTACAGGTGAATCACACAGATGGGGAAAAATTAAAAGGAAGAGAGAGGGTTGAGGC
TCAAGCTTCGCCCAACTCCTATGCCCGGATAGTAGGATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTGCACCGTCGACTTCCGGCGCCTGGACGAGGGTTTCGGGGGAAAAACCTACAAGAGAAAGCGCGAAGAAGAAGCTCACAACAGCCTCAACATCACCGACTCCGA
AAATGCCGCCGCCGCCGCCATGGACATCGACGACTCGCTTCCGCCGCCGTCCAAGCGATCCGCGGTTCCTTCGTCGGAAAATCCTGACAAACCGACGTTCGGAAACCCTA
CGTACGACGGCGTTATCGCCGGAAAGGTCTCCGGGCGGAACTGGAAGCAGCCGCGGAAGCACAGGACGTCGGCGATGCTGGTGAGCCGGAAAGGCACCACGTTCGAGGAG
AGGGAGAGGCAGAAGATGATCAAGGCGGCGTTTCGGGAGCGGAAGGAGGAGTTGAAGGAGCAGATTAGGTCAAACAAGGTGGAGAAGAGGAAGAAGAGGGAAGAAAGAGA
GAAGAAGAAGAAGGAGAACATTTTGAGGTCGGGAACTAAGCTACAGAAGATCACGAATCCCAAGACATTGAAGAAGATCGCCAAATCCAAGCAGAAGAAACTCCTCAAGT
GGAGGAAATCAAATCTAATAGATGATATTTTTGCTATTGATTTTAGCTTCGAAATTGAAGTATACTATTTTACCATCAGAATTGTGAACTTCAATTTTCATACACAAATT
ACTGACGATGCTTTCTCATATCTCATAGCTAAATCTCATGAAATCATCAATTGGGTACAGGTGAATCACACAGATGGGGAAAAATTAAAAGGAAGAGAGAGGGTTGAGGC
TCAAGCTTCGCCCAACTCCTATGCCCGGATAGTAGGATTTTAG
Protein sequenceShow/hide protein sequence
MACTVDFRRLDEGFGGKTYKRKREEEAHNSLNITDSENAAAAAMDIDDSLPPPSKRSAVPSSENPDKPTFGNPTYDGVIAGKVSGRNWKQPRKHRTSAMLVSRKGTTFEE
RERQKMIKAAFRERKEELKEQIRSNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLKWRKSNLIDDIFAIDFSFEIEVYYFTIRIVNFNFHTQI
TDDAFSYLIAKSHEIINWVQVNHTDGEKLKGRERVEAQASPNSYARIVGF