CuGenDBv2

Gene ID	Sed0018360
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	Contig00347:45730..46818
RNA-Seq Expression	Sed0018360
Synteny	Sed0018360
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR020592 - Ribosomal protein S16, conserved site IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QKX48455.1 ribosomal protein S16 [Luffa acutangula]

5.8e-36

95.24

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDL KVGFYDPIKNKTYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009004027.1 ribosomal protein S16 [Cucumis hystrix]

1.3e-35

95.18

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Query:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]

1.7e-35

94.05

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009744559.1 ribosomal protein S16 [Potaninia mongolica]

1.3e-35

90.36

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Query:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ +YRI+AIDVR+RREGRDL KVGFYDPIKN+ YLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009945400.1 ribosomal protein S16 [Sechium edule]

1.4e-37

97.62

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A1V0IR61 Ribosomal protein S16

6.2e-36

90.36

Show/hide

Query:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ +YRI+AIDVR+RREGRDL KVGFYDPIKN+ YLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A343UM14 30S ribosomal protein S16, chloroplastic

6.2e-36

95.18

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Query:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A6H0EQH4 30S ribosomal protein S16, chloroplastic

6.6e-38

97.62

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A7D5CPP0 30S ribosomal protein S16, chloroplastic

2.8e-36

95.24

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDL KVGFYDPIKNKTYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

W8E1Y8 Ribosomal protein S16

6.2e-36

95.18

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Query:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

2.3e-35

88.1

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRI+ IDVRSRREGRDL KVGFYDPI N+TYLNVPAI+YFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q0ZJ38 30S ribosomal protein S16, chloroplastic

1.5e-34

86.9

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRI+AID RSRREGRDL KVGFYDPIKN+TY NVPAI+YFLEKGAQPTGTVHDI KKA VFTEL LNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2L8Y7 30S ribosomal protein S16, chloroplastic

7.8e-36

89.29

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ  VYRI+AIDVRSRREGRDL KVGFYDPI N+TYLNVPAI+YFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2QDA6 30S ribosomal protein S16, chloroplastic

2.9e-38

92.94

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Query:  MVKLRLKRCGRKQ--PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ   VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q9MTQ0 30S ribosomal protein S16, chloroplastic

1.5e-34

84.52

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCG+KQ  VYRI+AIDVRSRREGRDL KVGFYDPI NKTYL++P I+YFLEKGAQPTGTV+DILKKAGVFTE  LNQ
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

2.4e-11

43.75

Show/hide

Query:  VKLRLKRCGRK-QPVYRIIAIDVRSRREGRDLCKVGFYDPIKNK-----TYLNVPAIIYFLEKGAQPTGTVHDILKKAGV
        VK+RL R G K +P YR++  D +SRR+G+ +  +GFYDP++ K       L    I Y+L  GAQPT TV  +L +AG+
Subjt:  VKLRLKRCGRK-QPVYRIIAIDVRSRREGRDLCKVGFYDPIKNK-----TYLNVPAIIYFLEKGAQPTGTVHDILKKAGV

AT5G56940.1 Ribosomal protein S16 family protein

1.0e-06

33.33

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Query:  MVKLRLKRCG-RKQPVYRIIAIDVRSRREGRDLCKVGFYDPIK-----NKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGV
        +V++RL R G + +P +R++A D RS R+G+ L  +G+++P+       +  L    I Y+L  GAQP+  V  +L ++G+
Subjt:  MVKLRLKRCG-RKQPVYRIIAIDVRSRREGRDLCKVGFYDPIK-----NKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGV

ATCG00050.1 ribosomal protein S16

2.5e-29

78.48

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Query:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTE
        MVKLRLKRCGRKQ  VYRI+AIDVR RREGRDL KVGFYDPI N+T+LN+ AI+ FL+KGAQPT T HDI KKAG+FTE
Subjt:  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTE

Sequences

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CDS sequence

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ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTT
TTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAG
GGGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

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Protein sequence

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MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Sed0018360 (gene) of Chayote v1 genome