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Sed0018372 (gene) of Chayote v1 genome

Gene IDSed0018372
OrganismSechium edule (Chayote v1)
DescriptionPMD domain-containing protein
Genome locationLG10:14886266..14887687
RNA-Seq ExpressionSed0018372
SyntenySed0018372
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]3.4e-3349.04Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DG     ++P A   +  W  L N   L  LS E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T+ K+ G++ F D YWEWLE VVGRN ++L   RL   V ASLYTYD  +DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]1.3e-3247.77Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DG     ++P A   +  W  L N   L  LS E+P      AW+L+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T+ K+ G++ F D YWEWLE VVGRN ++L   RL   V  SLYTYD  +DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]1.3e-3247.77Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DG     ++P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T++K+ G++ F D YWEWLE VVG+N ++L    L   V ASLYTYD   DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

KAA0061098.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.3e-3449.68Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DG     ++P A T +  W  L N   LS LS E+P      AWVL+S +H    N    LT G+RLIEG+THW
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T+ K+ G++ F D YWEWLE VVGRN ++L    L   V ASLYTYD  NDVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]1.3e-3247.77Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DG     ++P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T++K+ G++ F D YWEWLE VVG+N ++L    L   V ASLYTYD   DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

TrEMBL top hitse value%identityAlignment
A0A5A7TX42 Uncharacterized protein1.6e-3349.04Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DG     ++P A   +  W  L N   L  LS E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T+ K+ G++ F D YWEWLE VVGRN ++L   RL   V ASLYTYD  +DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

A0A5A7U8L3 PMD domain-containing protein6.2e-3347.77Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DG     ++P A   +  W  L N   L  LS E+P      AW+L+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T+ K+ G++ F D YWEWLE VVGRN ++L   RL   V  SLYTYD  +DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

A0A5A7V4F4 PMD domain-containing protein6.2e-3347.77Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DG     ++P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T++K+ G++ F D YWEWLE VVG+N ++L    L   V ASLYTYD   DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

A0A5D3BRA8 PMD domain-containing protein6.2e-3347.77Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ QL +DG     ++P A   +  W  L N   L  L  E+P      AWVL+SS+H    N    LTLG+RLIEG+T W
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T++K+ G++ F D YWEWLE VVG+N ++L    L   V ASLYTYD   DVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

A0A5D3BXQ4 Putative mitochondrial protein1.1e-3449.68Show/hide
Query:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW
        MV+F ER  SG+++LVIL D+ Q  +DG     ++P A T +  W  L N   LS LS E+P      AWVL+S +H    N    LT G+RLIEG+THW
Subjt:  MVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHL-NVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGRRLIEGETHW

Query:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF
         T+ K+ G++ F D YWEWLE VVGRN ++L    L   V ASLYTYD  NDVVRAF
Subjt:  NTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATCTGTGAGCACTTGACGAATGAACATCTGGGAGAACTTACACGTTCCATGATCATGGTGCATTTTGCCGAACGCGTTACCTCCGGGTTGAAGTATTTGGTGAT
TTTGAAGGATAAAGAGCAGTTAATTAAGGATGGGTGTCTTTACTTCTTTCAAGAGCCCTTAGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTCTGT
CTGAACTATCAAGAGAGTTACCCTTTGAAGGCAATGATAAAGCTTGGGTCTTAAAATCTTCAATGCATTGTCGAAATTATAATGAAGACCCCGAACTAACATTAGGGCGT
CGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATGAAGATTCATGGTGATTGGTCTTTCATTGATTTTTATTGGGAATGGCTAGAATTTGTCGTTGGTCGTAATGA
AAAAGTGCTTAACCAGAATCGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGATCATTGTAATGATGTGGTTCGTGCTTTTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATCTGTGAGCACTTGACGAATGAACATCTGGGAGAACTTACACGTTCCATGATCATGGTGCATTTTGCCGAACGCGTTACCTCCGGGTTGAAGTATTTGGTGAT
TTTGAAGGATAAAGAGCAGTTAATTAAGGATGGGTGTCTTTACTTCTTTCAAGAGCCCTTAGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTCTGT
CTGAACTATCAAGAGAGTTACCCTTTGAAGGCAATGATAAAGCTTGGGTCTTAAAATCTTCAATGCATTGTCGAAATTATAATGAAGACCCCGAACTAACATTAGGGCGT
CGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATGAAGATTCATGGTGATTGGTCTTTCATTGATTTTTATTGGGAATGGCTAGAATTTGTCGTTGGTCGTAATGA
AAAAGTGCTTAACCAGAATCGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGATCATTGTAATGATGTGGTTCGTGCTTTTCTGTGA
Protein sequenceShow/hide protein sequence
MNICEHLTNEHLGELTRSMIMVHFAERVTSGLKYLVILKDKEQLIKDGCLYFFQEPLASTLSPTWQHLNVKFLSELSRELPFEGNDKAWVLKSSMHCRNYNEDPELTLGR
RLIEGETHWNTIMKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNRLRNVVMASLYTYDHCNDVVRAFL