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Sed0018383 (gene) of Chayote v1 genome

Gene IDSed0018383
OrganismSechium edule (Chayote v1)
DescriptionTranscription termination factor 4
Genome locationContig00298_ERROPOS2519015:66435..68788
RNA-Seq ExpressionSed0018383
SyntenySed0018383
Gene Ontology termsGO:0090266 - regulation of mitotic cell cycle spindle assembly checkpoint (biological process)
GO:0005680 - anaphase-promoting complex (cellular component)
InterPro domainsIPR026182 - Anaphase-promoting complex subunit 15


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152491.1 uncharacterized protein LOC101206898 [Cucumis sativus]3.8e-3991.67Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS  KIPTS+LLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKM+ADNDKED+EAEDDDADNA+ESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
XP_008438807.1 PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo]3.8e-3992.71Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKED+EAEDDDADNAEESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
XP_018813880.1 uncharacterized protein LOC108985877 [Juglans regia]3.7e-3483.84Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDV--EAEDDDADNAEESEAEEFEQETA
        MLQFPAFM QYPWS   IPTS+LLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLVVIGK + DNDKED   +A+DDDADNAEESE EEFEQETA
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDV--EAEDDDADNAEESEAEEFEQETA
XP_022137094.1 uncharacterized protein LOC111008654 [Momordica charantia]1.7e-3992.78Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQETA
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKED+EAEDDDADN EESEAEEFEQETA
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQETA
XP_038894516.1 uncharacterized protein LOC120083062 [Benincasa hispida]4.2e-3891.67Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSN VVIGKM ADNDKED+EAEDDDADNAEESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
TrEMBL top hitse value%identityAlignment
A0A0A0LWF0 Uncharacterized protein1.8e-3991.67Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS  KIPTS+LLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKM+ADNDKED+EAEDDDADNA+ESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
A0A5A7UJS1 Transcription termination factor 41.8e-3992.71Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKED+EAEDDDADNAEESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
A0A6J1C684 uncharacterized protein LOC1110086548.3e-4092.78Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQETA
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKED+EAEDDDADN EESEAEEFEQETA
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQETA
A0A6J1GSM6 uncharacterized protein LOC1114567621.8e-3992.71Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKED+EAEDDDADNAEESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
A0A6J1JWJ6 uncharacterized protein LOC1114903241.8e-3992.71Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
        MLQFPAFM QYPWS   IPTS+LLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKED+EAEDDDADNAEESEAEEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQET
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G63135.1 unknown protein1.5e-2870.41Show/hide
Query:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKE--DVEAEDDDADNAEESEAEEFEQET
        MLQFP  M Q+P S   IP SYLLP QWPQPQNEE+LLAMEE++FEEKCNEIRK +  L VIGK   +N++E  D EAEDDDADNAEES+ EEFEQET
Subjt:  MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKE--DVEAEDDDADNAEESEAEEFEQET

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCAGTTTCCGGCGTTCATGAGGCAGTACCCTTGGTCGGCAAGCAAGATTCCGACCTCATATTTACTGCCGTCTCAGTGGCCTCAGCCCCAAAATGAAGAGCTACT
CCTCGCCATGGAAGAATCTGATTTCGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTCATTGGCAAAATGAGTGCTGACAATGACAAGGAAGATG
TCGAGGCCGAAGACGACGATGCTGACAATGCTGAGGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAGTTACAAAAATGTTTTTTCAATTAAAAAACATCGAGGGAATGACAAGGATAAACAGAGCAGGGTGAAGACTGGAACCGCAATGGGGAGAGAAGTAAACCAGTTGC
CAAACACAGCGCTTGAGATTTCTGTATTCCCGCAACCGAGCGAGCCAATTCGTTCGTCTCCAGTTTGGATCTCCGGCGAGAAAAAATGCTGCAGTTTCCGGCGTTCATGA
GGCAGTACCCTTGGTCGGCAAGCAAGATTCCGACCTCATATTTACTGCCGTCTCAGTGGCCTCAGCCCCAAAATGAAGAGCTACTCCTCGCCATGGAAGAATCTGATTTC
GAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTCATTGGCAAAATGAGTGCTGACAATGACAAGGAAGATGTCGAGGCCGAAGACGACGATGCTGA
CAATGCTGAGGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGCTTAAAACTTACAGCCACATAATCCTGAATTTGCTTGTGCATTACCAAATCATTTTTCTCTTTTTC
TTCACCATAAATCTGCCATTTTGGATAGCCAAACTTTCTGTAATTGTTGAATTTTCGATTGTCAAAGTTTCAAATTTGTGCCTTTTCTGTTCAAGAATTATGGGTTGGGG
AATGGTATCAAATTATCGACTTTTGAAATGATAATAACTCTATGACCATTCAATTATGTTTGGATGGAGAAATTTATTTCTCCCGAGTCAATGCAGTATTTGAAGTTTGA
TGGATG
Protein sequenceShow/hide protein sequence
MLQFPAFMRQYPWSASKIPTSYLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDVEAEDDDADNAEESEAEEFEQETA