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Sed0018411 (gene) of Chayote v1 genome

Gene IDSed0018411
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L10-like
Genome locationLG13:4434737..4435700
RNA-Seq ExpressionSed0018411
SyntenySed0018411
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001197 - Ribosomal protein L10e
IPR016180 - Ribosomal protein L10e/L16
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8666539.1 60S ribosomal protein L10 [Hibiscus syriacus]3.6e-3069.72Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGKPLGTCARVDIGQVLLSVRCK +N  +AQ+AL RAKFKF G QKIIVSRKWGFTK+NRADYL++KSEN    R+         L    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSSA
        P RAFLS A
Subjt:  PVRAFLSSA

XP_004137249.1 60S ribosomal protein L10 [Cucumis sativus]2.1e-3071.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKP GTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RADYLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

XP_008451785.1 PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]2.1e-3071.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKP GTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RADYLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

XP_022931333.1 60S ribosomal protein L10-like [Cucurbita moschata]1.3e-3071.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKPLGTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RA+YLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

XP_039041889.1 60S ribosomal protein L10-like [Hibiscus syriacus]3.6e-3069.72Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGKPLGTCARVDIGQVLLSVRCK +N  +AQ+AL RAKFKF G QKIIVSRKWGFTK+NRADYL++KSEN    R+         L    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSSA
        P RAFLS A
Subjt:  PVRAFLSSA

TrEMBL top hitse value%identityAlignment
A0A0A0KYV1 Ribosomal_L16 domain-containing protein1.0e-3071.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKP GTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RADYLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

A0A1S3BT36 60S ribosomal protein L10-like1.0e-3071.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKP GTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RADYLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

A0A5D3CWP6 60S ribosomal protein L10-like1.0e-3071.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKP GTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RADYLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

A0A6J1EY90 60S ribosomal protein L10-like6.1e-3171.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKPLGTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RA+YLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

A0A6J1J6Y1 60S ribosomal protein L10-like6.1e-3171.3Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH
        MRGAFGKPLGTCARVDIGQVLLSVRCK NN QNAQ+AL RAKFKF G QKIIVSRKWGFTK +RA+YLKYK+EN +     L   + +  L    PLAN 
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQS-FLDAMKPLANH

Query:  QPVRAFLS
        QP RAFLS
Subjt:  QPVRAFLS

SwissProt top hitse value%identityAlignment
P45633 60S ribosomal protein L108.7e-2780.82Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSE
        MRGAFGKP GTCARVDIGQVLLSVRCK NN  +A +AL RAKFKF   QKII SRKWGFTK +RADYLKYKSE
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSE

P93847 60S ribosomal protein L103.2e-2966.06Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGKP G CARV IGQVLLSVRCK  N  +AQ+AL RAKFKF G QKIIVSRKWGFTK +R DYLKYKSEN    R+         L    PLA  Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSSA
        P RAFLSS+
Subjt:  PVRAFLSSA

Q08770 60S ribosomal protein L10-21.8e-2763.89Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGK LGTCARV IGQVLLSVRCK  +  +AQ+AL RAKFKF G QKIIVSRKWGFTK NRADY K + E     R+        FL    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSS
        P  AFLS+
Subjt:  PVRAFLSS

Q9M5M7 60S ribosomal protein L107.9e-2863.89Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGKP G CARV IGQVLLSVRCK NN  NAQ+AL RAKFKF G QKIIVSRKWGFTK NRADY + KSEN    R+         L     LAN +
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSS
        P RAF+ +
Subjt:  PVRAFLSS

Q9SPB3 60S ribosomal protein L101.2e-2862.04Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGKP GTCARV IGQVLLSVRCK  N  +AQ+AL RAKFKF   QKIIVSRKWGFTK NR DY+K+KS+N    R+         L    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSS
        P +AF+++
Subjt:  PVRAFLSS

Arabidopsis top hitse value%identityAlignment
AT1G14320.1 Ribosomal protein L16p/L10e family protein1.4e-2763.21Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGK LGTCARV IGQVLLSVRCK  +  +AQ+AL RAKFKF G QKIIVSRKWGFTK NRAD+ K + E     R+        FL    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFL
        P  AFL
Subjt:  PVRAFL

AT1G14320.2 Ribosomal protein L16p/L10e family protein2.9e-1757.47Show/hide
Query:  VLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQPVRAFL
        VLLSVRCK  +  +AQ+AL RAKFKF G QKIIVSRKWGFTK NRAD+ K + E     R+        FL    PLAN QP  AFL
Subjt:  VLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQPVRAFL

AT1G26910.1 Ribosomal protein L16p/L10e family protein1.2e-2863.89Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGK LGTCARV IGQVLLSVRCK  +  +AQ+AL RAKFKF G QKIIVSRKWGFTK NRADY K + E     R+        FL    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSS
        P  AFLS+
Subjt:  PVRAFLSS

AT1G66580.1 senescence associated gene 241.1e-2762.04Show/hide
Query:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ
        MRGAFGK LGTCARV IGQVLLSVRCK N+  +AQ+AL RAKFKF G QKIIVSRKWGFTK NRA+Y K ++      R+        FL    PLAN Q
Subjt:  MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQ

Query:  PVRAFLSS
        P  AF+S+
Subjt:  PVRAFLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGAGTCGACATAGGTCAGGTTCTCCTCTCGGTTCGCTGCAAGGGCAACAATGTTCAGAACGCGCAGGATGC
CCTCTGCCGTGCAAAGTTCAAGTTCCTCGGTCTTCAGAAGATTATTGTTAGCAGGAAGTGGGGATTCACTAAACACAACCGAGCTGATTATTTGAAGTACAAGTCCGAGA
ACAGTATGCGTACGAGATTGTTCCTGATGGTGTCAATACAAAGCTTCTTGGATGCCATGAAGCCTCTGGCTAACCATCAGCCTGTAAGAGCTTTTCTATCTTCTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGTGCATTTGGCAAACCACTAGGAACCTGTGCGAGAGTCGACATAGGTCAGGTTCTCCTCTCGGTTCGCTGCAAGGGCAACAATGTTCAGAACGCGCAGGATGC
CCTCTGCCGTGCAAAGTTCAAGTTCCTCGGTCTTCAGAAGATTATTGTTAGCAGGAAGTGGGGATTCACTAAACACAACCGAGCTGATTATTTGAAGTACAAGTCCGAGA
ACAGTATGCGTACGAGATTGTTCCTGATGGTGTCAATACAAAGCTTCTTGGATGCCATGAAGCCTCTGGCTAACCATCAGCCTGTAAGAGCTTTTCTATCTTCTGCCTAG
Protein sequenceShow/hide protein sequence
MRGAFGKPLGTCARVDIGQVLLSVRCKGNNVQNAQDALCRAKFKFLGLQKIIVSRKWGFTKHNRADYLKYKSENSMRTRLFLMVSIQSFLDAMKPLANHQPVRAFLSSA