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Sed0018472 (gene) of Chayote v1 genome

Gene IDSed0018472
OrganismSechium edule (Chayote v1)
DescriptionUbiquitin domain-containing protein
Genome locationLG04:37789914..37792282
RNA-Seq ExpressionSed0018472
SyntenySed0018472
Gene Ontology termsGO:0071897 - DNA biosynthetic process (biological process)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR032752 - DC-UbP/UBTD2, N-terminal domain
IPR038169 - DC-UbP/UBTD2, N-terminal domain superfamily
IPR039869 - Ubiquitin domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463752.1 PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo]7.8e-4692.93Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        G VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIVDSAG+IVQ+ADLTICYDERGAKYELPKYVLSEPTNLI
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

XP_022144511.1 ubiquitin domain-containing protein 1-like [Momordica charantia]7.8e-4692.93Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        GPVKKIRKPK WKHPQPITKT+LV+MRDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIVDSAGVIVQ+ADLTICYDERGAKYELPKYVLSEPTNLI
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

XP_038898666.1 ubiquitin domain-containing protein 1-like [Benincasa hispida]2.4e-4794Show/hide
Query:  SGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        +GPVKKIRKPKPWKHPQPI+KTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIVDSAGVIVQ+ADLTICYDERGAKYELPKYVLSEPTNLI
Subjt:  SGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

XP_040989150.1 ubiquitin domain-containing protein 1-like isoform X1 [Juglans microcarpa x Juglans regia]7.8e-4687.5Show/hide
Query:  VLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEP
        V+F  G VKKIRKPKPWKHPQPITKT LV++RDEFWDTAPHYGGRKEIWDAL+AAA ADL L+QAIV+SAGVIVQ+ADLTICYDERGAKYELPKYVLSEP
Subjt:  VLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEP

Query:  TNLI
        TNLI
Subjt:  TNLI

XP_042953289.1 ubiquitin domain-containing protein 1-like isoform X1 [Carya illinoinensis]7.8e-4687.5Show/hide
Query:  VLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEP
        V+F  G VKKIRKPKPWKHPQPITKT L+++RDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIV+SAGVIVQ+ADLTICYDERGAKYELPKYVLSEP
Subjt:  VLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEP

Query:  TNLI
        TNLI
Subjt:  TNLI

TrEMBL top hitse value%identityAlignment
A0A0A0KZH7 UBD domain-containing protein4.9e-4691.92Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        G VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIVDSAG+IVQ+ADLTICYDERGAKYELPKYVLSEPTNL+
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

A0A1S3CJZ5 ubiquitin domain-containing protein 1-like3.8e-4692.93Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        G VKKIRKPKPWK+PQPITKTDLVRMRDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIVDSAG+IVQ+ADLTICYDERGAKYELPKYVLSEPTNLI
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

A0A6A3C3E0 Ubiquitin domain-containing protein 11.1e-4591.92Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        G VKKIR+PKPWKHPQPITK+ LVRMR+EFWDT+PHYGGRKEIWDALQAAA ADLELAQAIVDSAGVIVQ ADLTICYDERGAKYELPKYVLSEPTNLI
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

A0A6J1CTM1 ubiquitin domain-containing protein 1-like3.8e-4692.93Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        GPVKKIRKPK WKHPQPITKT+LV+MRDEFWDTAPHYGGRKEIWDAL+AAA ADL LAQAIVDSAGVIVQ+ADLTICYDERGAKYELPKYVLSEPTNLI
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

A0A6P9F582 ubiquitin domain-containing protein 1-like isoform X18.4e-4686.54Show/hide
Query:  VLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEP
        V+F  G VKKIRKPKPWKHPQPITKT L+++RDEFWDTAPHYGGRKEIWDAL+AAA ADL L+QAIV+SAGVIVQ+ADLTICYDERGAKYELPKYVLSEP
Subjt:  VLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEP

Query:  TNLI
        TNLI
Subjt:  TNLI

SwissProt top hitse value%identityAlignment
Q4V8W7 Ubiquitin domain-containing protein 11.3e-2257.84Show/hide
Query:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN
        P+KK  KPK WK   P+T+  L   RDEFWDTAP + GRKEIWDAL+AAA A    D ELAQAIVD A + +    LT CYDE G +Y+LP Y L+ P N
Subjt:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN

Query:  LI
        LI
Subjt:  LI

Q5EAE3 Ubiquitin domain-containing protein 21.1e-2155.88Show/hide
Query:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN
        P+KK  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA A    D ELAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N
Subjt:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN

Query:  LI
        +I
Subjt:  LI

Q6DG43 Ubiquitin domain-containing protein 26.3e-2255.88Show/hide
Query:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN
        P+K+  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA A    D ELAQAI+D A + +    LT CYDE G +Y+LP Y LS P N
Subjt:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN

Query:  LI
        +I
Subjt:  LI

Q6GL38 Ubiquitin domain-containing protein 12.8e-2253.33Show/hide
Query:  SGPVKKIRKPKP-WKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAA----AADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSE
        +G  + ++K +P WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA    A D ELAQAIVD A + +    LT CYDE G +Y+LP Y L+ 
Subjt:  SGPVKKIRKPKP-WKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAA----AADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSE

Query:  PTNLI
        P NLI
Subjt:  PTNLI

Q8WUN7 Ubiquitin domain-containing protein 21.1e-2155.88Show/hide
Query:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN
        P+KK  KPK WK   P+T   L   RDEFWDTAP + GRKEIWDAL+AAA A    D ELAQAI+D A + +    LT CYDE G +Y+LP Y L+ P N
Subjt:  PVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA----DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTN

Query:  LI
        +I
Subjt:  LI

Arabidopsis top hitse value%identityAlignment
AT1G16960.1 Ubiquitin domain-containing protein7.6e-3972Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA-DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        G  +KIR+PK WKHPQPI++ +L +MR+EFWDTAPHYGG+KEIWDAL+AAA   DL LAQ I++SAGVIVQ  DLTICYDE+G+KYELPKYVL +P+NLI
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAA-DLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI

AT1G53400.1 Ubiquitin domain-containing protein6.4e-4684.69Show/hide
Query:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNL
        G VKKIRKPKPWKH QPITK +L+++R+EFWDTAPHYGGRKEIWDAL+AAA AD+ LAQAIVDSAGVIVQ  DLT+CYDERGAKYELPKYVLSEPTNL
Subjt:  GPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNL

AT5G45740.1 Ubiquitin domain-containing protein6.8e-4075Show/hide
Query:  KKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI
        KKI KPKPW H +PIT+  L  MR+EFWDT+PHYGG++EIW+AL+AAA ADL+LAQ IVDSAGVIVQ  DLT+C+DERGA+YELP+YVLSEPTNLI
Subjt:  KKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQTADLTICYDERGAKYELPKYVLSEPTNLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCAGGCTCTTCAACTTTATTTGTTCCATGATTGTTTATCAGATGTTAATCTCAAAAGTCATAAGGAACTTATCCCATCCTTTTAGTCATTTGAATGTTCTTTT
CAATTCAGGGCCTGTGAAAAAGATTCGGAAGCCTAAACCTTGGAAGCATCCCCAGCCAATAACTAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCAC
CTCATTATGGTGGCAGAAAAGAAATCTGGGATGCACTACAAGCTGCTGCAGCAGCTGATCTGGAGCTAGCCCAAGCAATTGTGGATAGTGCAGGAGTCATTGTACAAACT
GCTGATTTAACAATTTGTTACGATGAAAGAGGAGCAAAATACGAATTGCCCAAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGA
mRNA sequenceShow/hide mRNA sequence
GCGAATTGATTGTTGCCATTTTACTCTTTGTGATTTAATCATTGTTCTTTAAGCTTATAGTTGATGATTTGTTTTCCCCTGAGATTGATTTGTGTTTTTATAATTTTATT
GCCCTTTTCGTTTTAGGACATTTGGTTTGAAGCTTCTTGAATTTGTAATGGTTGGTTTTGAAAAGCTGAGATTGATTAGTTTCTCATTTGGTTGTAGAACAGCGCTTGAT
TTGATTTCTTGAGTTTTTAGTTTGAAACTCTGTGGACTGTGGCATATTTGGGTTGGGTGTTAATTGTTTGTATCTCATACATGCCCTCGTGTGGATTTGAGTTTTGTAAA
TCGATATGATGCGATTGGCGAATGAGATGATTGAAATGTTCATAGAAATGCTCATGGTATTGTAGAATTTTTAATGTAACATTCTTAGCAAGATGGCAACCATGTTGGCT
TCTTATGTTGTAATGTTGATGTGATCAGTTCTTTCATTGATCATACCTTTATTTTTCTAATGAAATTCAGGCTCTTCAACTTTATTTGTTCCATGATTGTTTATCAGATG
TTAATCTCAAAAGTCATAAGGAACTTATCCCATCCTTTTAGTCATTTGAATGTTCTTTTCAATTCAGGGCCTGTGAAAAAGATTCGGAAGCCTAAACCTTGGAAGCATCC
CCAGCCAATAACTAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAAATCTGGGATGCACTACAAGCTGCTGCAG
CAGCTGATCTGGAGCTAGCCCAAGCAATTGTGGATAGTGCAGGAGTCATTGTACAAACTGCTGATTTAACAATTTGTTACGATGAAAGAGGAGCAAAATACGAATTGCCC
AAGTATGTTTTGAGCGAGCCAACCAACTTGATTTGAAGTAATATCAGAGAGATGAGAGGGGGGGTTTATTGAGTGTAAATCATGTATATTACAATATTACTTACTCACTT
TCAAACATTTCTCACATTGTTTCAATGGACTTTTGCTAACTTGCTCTAAGTTCGTTTTCATCAAATGAGATGTGAATTGTCATTTTTAGTAGTTTGTTCTGCAAATTTTA
TGTAGGTTTGTAATGTAATAGGTTGATTAACTGTGG
Protein sequenceShow/hide protein sequence
MKFRLFNFICSMIVYQMLISKVIRNLSHPFSHLNVLFNSGPVKKIRKPKPWKHPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALQAAAAADLELAQAIVDSAGVIVQT
ADLTICYDERGAKYELPKYVLSEPTNLI