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Sed0018520 (gene) of Chayote v1 genome

Gene IDSed0018520
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG04:8357233..8357454
RNA-Seq ExpressionSed0018520
SyntenySed0018520
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]1.3e-1562.86Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD +FVL EECPPAPAPNA R +R+ +DRW  AN K  VYIL S+S++L KK E + T  EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]8.4e-1561.43Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD +FVL EECPPA APN+ + +R+ HDRW  AN K  VYIL S+S +L KK E + TA EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

XP_022159023.1 uncharacterized protein LOC111025468 [Momordica charantia]4.9e-1562.86Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD + VL EECPPAPAPNA R +RE +DRW  AN K  VYIL S+S +L KK E + TA E+M
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

XP_038880476.1 uncharacterized protein LOC120072136 [Benincasa hispida]1.4e-1465.71Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD KFVL EECPP PA N  R I + HDRW  AN K  VYIL S+S IL KK E MV A EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

XP_038885848.1 uncharacterized protein LOC120076150 [Benincasa hispida]8.4e-1561.43Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTIL+I+D KFVL+EECPP P P A+R +RE +DRW  AN KT VYIL S+SK+L KK E MV+A ++M
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.5e-1458.57Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NT+L+IDD +FVL+EECP  PA NATR +RE ++RW  AN K   YIL S+S++L KK E+M+TA EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

A0A6J1DWG6 uncharacterized protein LOC1110250216.3e-1662.86Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD +FVL EECPPAPAPNA R +R+ +DRW  AN K  VYIL S+S++L KK E + T  EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

A0A6J1DWI4 uncharacterized protein LOC1110241451.2e-1461.43Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILV+DD +F+L EECP AP PNA R  R+ +DRW  AN K  VYIL S+S +L KK E+MVTA EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

A0A6J1DXP1 uncharacterized protein LOC1110254682.4e-1562.86Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD + VL EECPPAPAPNA R +RE +DRW  AN K  VYIL S+S +L KK E + TA E+M
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

A0A6J1E205 uncharacterized protein LOC1110252584.1e-1561.43Show/hide
Query:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM
        +NTILVIDD +FVL EECPPA APN+ + +R+ HDRW  AN K  VYIL S+S +L KK E + TA EIM
Subjt:  MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACGATTCTTGTTATCGATGACAAAAAGTTTGTTCTCATGGAGGAATGCCCTCCTGCACCGGCACCTAATGCAACACGAAATATTCGTGAAACACATGATCGTTG
GCATAATGCTAATGGAAAGACAATGGTCTATATCTTGGAAAGTGTCTCGAAAATTCTAGTTAAGAAACTAGAGAACATGGTAACTGCTTTAGAGATTATGAAAGCCTCAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGAATACGATTCTTGTTATCGATGACAAAAAGTTTGTTCTCATGGAGGAATGCCCTCCTGCACCGGCACCTAATGCAACACGAAATATTCGTGAAACACATGATCGTTG
GCATAATGCTAATGGAAAGACAATGGTCTATATCTTGGAAAGTGTCTCGAAAATTCTAGTTAAGAAACTAGAGAACATGGTAACTGCTTTAGAGATTATGAAAGCCTCAT
GA
Protein sequenceShow/hide protein sequence
MNTILVIDDKKFVLMEECPPAPAPNATRNIRETHDRWHNANGKTMVYILESVSKILVKKLENMVTALEIMKAS