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Sed0018530 (gene) of Chayote v1 genome

Gene IDSed0018530
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG01:20397825..20401696
RNA-Seq ExpressionSed0018530
SyntenySed0018530
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.0e-3546.29Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        MRRFN FI    LIDPP  N  +TWSNLR   TLSRLDRFLF+  W   F  H +    R TSDHFPI+LES  + WG  PFRF N +L +  + + +  
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL
        WW ++  PG+ GYSFM  LK++A   K W       + A+KK  + EI  ID  E      +   E+R ALKADL
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL

KAA0063661.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.8e-3546.86Show/hide
Query:  NKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLE--SQHLKWGLCPFRFENVWLSNNHFGEALNSWW
        N FI    LIDPP  NN +TWSNLRISPT SRLDRFL++  W   F  H T    R TSDHFP+  E  S  ++WG  PFR  ++ L++  F   +  WW
Subjt:  NKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLE--SQHLKWGLCPFRFENVWLSNNHFGEALNSWW

Query:  ADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWD
          S   GH+G++F+  LK +A   K W +  F S  +AK+ I+ E+ AID KE   LL Q D +RR+ALKA+L D
Subjt:  ADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWD

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.8e-3546.86Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R TSDHFPI+LES  + WG  PFRF N +L +  +   +  
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL
        WW ++  PG  GYSFM  LK++A   K W         A+KK  + EI  I+  E      +   E+RIALKADL
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.8e-3441.71Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        M  FN FI   ELIDPP  NN FTWSNLR++PT SRLDRFL S+ W   F LH +    R  SDHFPILLES  +KWG CPFR  N  L +  F +   +
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLW--DPNPFRPLLDRETEQWRVISE
        WW  S   G  GY+F+ +L  ++   K W         A KK ++ EI  ID  E    +  T  ++RI+LK+DL   + N  +    R  ++W ++ +
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLW--DPNPFRPLLDRETEQWRVISE

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.1e-3647.43Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R TSDHFPI+LES  + WG  PFRF N +L +  + + +  
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL
        WW ++  PG+ GYSFM  LK++A   K W       + A+KK  + EI  ID  E      +   E+RIALKADL
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.9e-3546.29Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        MRRFN FI    LIDPP  N  +TWSNLR   TLSRLDRFLF+  W   F  H +    R TSDHFPI+LES  + WG  PFRF N +L +  + + +  
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL
        WW ++  PG+ GYSFM  LK++A   K W       + A+KK  + EI  ID  E      +   E+R ALKADL
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL

A0A5A7VD46 LINE-1 retrotransposable element ORF2 protein3.3e-3546.86Show/hide
Query:  NKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLE--SQHLKWGLCPFRFENVWLSNNHFGEALNSWW
        N FI    LIDPP  NN +TWSNLRISPT SRLDRFL++  W   F  H T    R TSDHFP+  E  S  ++WG  PFR  ++ L++  F   +  WW
Subjt:  NKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLE--SQHLKWGLCPFRFENVWLSNNHFGEALNSWW

Query:  ADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWD
          S   GH+G++F+  LK +A   K W +  F S  +AK+ I+ E+ AID KE   LL Q D +RR+ALKA+L D
Subjt:  ADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWD

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein3.3e-3546.86Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R TSDHFPI+LES  + WG  PFRF N +L +  +   +  
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL
        WW ++  PG  GYSFM  LK++A   K W         A+KK  + EI  I+  E      +   E+RIALKADL
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein2.8e-3441.71Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        M  FN FI   ELIDPP  NN FTWSNLR++PT SRLDRFL S+ W   F LH +    R  SDHFPILLES  +KWG CPFR  N  L +  F +   +
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLW--DPNPFRPLLDRETEQWRVISE
        WW +S   G  GY+F+ +L  ++   K W         A KK ++ EI  ID  E    +  T  ++RI+LK+DL   + N  +    R  ++W ++ +
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLW--DPNPFRPLLDRETEQWRVISE

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein3.9e-3647.43Show/hide
Query:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS
        M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R TSDHFPI+LES  + WG  PFRF N +L +  + + +  
Subjt:  MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNS

Query:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL
        WW ++  PG+ GYSFM  LK++A   K W       + A+KK  + EI  ID  E      +   E+RIALKADL
Subjt:  WWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGATTTAACAAGTTTATTGATAGAGCTGAGTTGATTGATCCTCCTACACAAAACAACTTTTTTACTTGGTCAAACCTCAGAATTTCTCCTACTCTATCTCGTCT
TGATAGATTCCTTTTCTCAGAAGCCTGGCTTCAAAAATTTCAACTCCATCATACAACAAGACGGAACAGAGTAACATCAGATCATTTTCCTATCCTACTTGAATCTCAAC
ATCTCAAGTGGGGCCTCTGTCCTTTTCGTTTTGAAAATGTTTGGTTAAGCAATAATCATTTTGGTGAAGCTTTGAATTCTTGGTGGGCTGACTCATATACTCCTGGGCAC
ATTGGATATTCTTTCATGGGTAACTTGAAGAAAATTGCTGCACATTGTAAGGTTTGGAATGAAAGGCACTTTGCTTCTTCTATGGCTGCAAAAAAGGAGATTGTGAATGA
AATTGCTGCTATCGATGCTAAAGAGGAACTTTTATTGCTGGATCAAACTGATGTGGAAAGGCGTATAGCTTTAAAGGCTGATCTATGGGACCCAAACCCATTCCGCCCAT
TATTAGATCGCGAAACTGAACAATGGAGGGTGATATCCGAGAGGTGGCCGCCGCTCCTAAGTCTCCCTCACATGGAAGATGTTGCTATATGGAAGCCTGCTGCTAATTCT
ATCTTTTATGTTGGATCCCTCAAATTGCTTCTTGCTTCTAATCCAATTGAGAGGAGGGGTACAATTATATCGAGCAATTTTTGGAGGAATGTGATCCCCAAAAACATCAA
GGTAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGATTTAACAAGTTTATTGATAGAGCTGAGTTGATTGATCCTCCTACACAAAACAACTTTTTTACTTGGTCAAACCTCAGAATTTCTCCTACTCTATCTCGTCT
TGATAGATTCCTTTTCTCAGAAGCCTGGCTTCAAAAATTTCAACTCCATCATACAACAAGACGGAACAGAGTAACATCAGATCATTTTCCTATCCTACTTGAATCTCAAC
ATCTCAAGTGGGGCCTCTGTCCTTTTCGTTTTGAAAATGTTTGGTTAAGCAATAATCATTTTGGTGAAGCTTTGAATTCTTGGTGGGCTGACTCATATACTCCTGGGCAC
ATTGGATATTCTTTCATGGGTAACTTGAAGAAAATTGCTGCACATTGTAAGGTTTGGAATGAAAGGCACTTTGCTTCTTCTATGGCTGCAAAAAAGGAGATTGTGAATGA
AATTGCTGCTATCGATGCTAAAGAGGAACTTTTATTGCTGGATCAAACTGATGTGGAAAGGCGTATAGCTTTAAAGGCTGATCTATGGGACCCAAACCCATTCCGCCCAT
TATTAGATCGCGAAACTGAACAATGGAGGGTGATATCCGAGAGGTGGCCGCCGCTCCTAAGTCTCCCTCACATGGAAGATGTTGCTATATGGAAGCCTGCTGCTAATTCT
ATCTTTTATGTTGGATCCCTCAAATTGCTTCTTGCTTCTAATCCAATTGAGAGGAGGGGTACAATTATATCGAGCAATTTTTGGAGGAATGTGATCCCCAAAAACATCAA
GGTAAGATAA
Protein sequenceShow/hide protein sequence
MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGH
IGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWDPNPFRPLLDRETEQWRVISERWPPLLSLPHMEDVAIWKPAANS
IFYVGSLKLLLASNPIERRGTIISSNFWRNVIPKNIKVR