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Sed0018533 (gene) of Chayote v1 genome

Gene IDSed0018533
OrganismSechium edule (Chayote v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG02:33483638..33486031
RNA-Seq ExpressionSed0018533
SyntenySed0018533
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72555.1 hypothetical protein VITISV_015793 [Vitis vinifera]7.6e-1059.62Show/hide
Query:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ
        H +  ++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHN RKCP+ G +
Subjt:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ

RVW52006.1 hypothetical protein CK203_068088 [Vitis vinifera]6.8e-1166Show/hide
Query:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG
        H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Subjt:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG

RVX19406.1 hypothetical protein CK203_008540 [Vitis vinifera]6.8e-1166Show/hide
Query:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG
        H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Subjt:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG

TYK18693.1 hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa]5.8e-1034.31Show/hide
Query:  APPLPHTIELYVSQIYMDT------------TVGGEKRVTHDECRVTNEETCINMNDDNDEDDH-EFFYGTEEVPEFFTTLDMTVINSLPDSGIELEARE
        APPLPH +ELY+SQ  + +            T   E+    D    TN E     +DD+D D      +G  +VPE F  +D+  +NS  D+ ++ E   
Subjt:  APPLPHTIELYVSQIYMDT------------TVGGEKRVTHDECRVTNEETCINMNDDNDEDDH-EFFYGTEEVPEFFTTLDMTVINSLPDSGIELEARE

Query:  PDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEK
         + LM  M+F +K++LKN VK Y+++ HQ F V++ K
Subjt:  PDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEK

XP_038877923.1 uncharacterized protein LOC120070133 [Benincasa hispida]2.1e-2837.99Show/hide
Query:  VGFSIYMNGNIVNGPNVIQYDVPSYRQLSVTRDIGLDSFMNGLCQGLGIQRNEGLEVIYRHGNIGVNGNIIYAPITIRSDVEFNFMTALAPPLPHTIELY
        V F  YM+GNIVNGP+ I+YD     ++++ R    ++ ++G      I R++ +EVI+R+G+  V  +  + PI++RSD++  FM + AP  P+ +ELY
Subjt:  VGFSIYMNGNIVNGPNVIQYDVPSYRQLSVTRDIGLDSFMNGLCQGLGIQRNEGLEVIYRHGNIGVNGNIIYAPITIRSDVEFNFMTALAPPLPHTIELY

Query:  VSQIYMDT---------TVGGEKRVTHDE----CRVTNEETCINMNDDNDEDDH--EFFYGTEEVPEFFTTLDMTVINSLPDSGI-ELEAREPDGLMKGM
        +SQ  + +         TV  E  V  DE       TN+E  + M+DD+ + D     FYG  EVPE FT +D+  + + PDS   E      D L+KGM
Subjt:  VSQIYMDT---------TVGGEKRVTHDE----CRVTNEETCINMNDDNDEDDH--EFFYGTEEVPEFFTTLDMTVINSLPDSGI-ELEAREPDGLMKGM

Query:  MFETKKDLKNAVKSYSVLHHQHFNVIEEK
        +F +K DLKN V++YS++ HQ+F VIE K
Subjt:  MFETKKDLKNAVKSYSVLHHQHFNVIEEK

TrEMBL top hitse value%identityAlignment
A0A438EWG2 SWIM-type domain-containing protein3.3e-1166Show/hide
Query:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG
        H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Subjt:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG

A0A438HTP0 Uncharacterized protein8.2e-1063.83Show/hide
Query:  VIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ
        ++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHN RKCP+ G +
Subjt:  VIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ

A0A438KDW5 SWIM-type domain-containing protein3.3e-1166Show/hide
Query:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG
        H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Subjt:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG

A0A5D3D569 Uncharacterized protein2.8e-1034.31Show/hide
Query:  APPLPHTIELYVSQIYMDT------------TVGGEKRVTHDECRVTNEETCINMNDDNDEDDH-EFFYGTEEVPEFFTTLDMTVINSLPDSGIELEARE
        APPLPH +ELY+SQ  + +            T   E+    D    TN E     +DD+D D      +G  +VPE F  +D+  +NS  D+ ++ E   
Subjt:  APPLPHTIELYVSQIYMDT------------TVGGEKRVTHDECRVTNEETCINMNDDNDEDDH-EFFYGTEEVPEFFTTLDMTVINSLPDSGIELEARE

Query:  PDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEK
         + LM  M+F +K++LKN VK Y+++ HQ F V++ K
Subjt:  PDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEK

A5BP71 PMD domain-containing protein3.7e-1059.62Show/hide
Query:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ
        H +  ++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHN RKCP+ G +
Subjt:  HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTGGATTTAGTATTTATATGAATGGAAACATAGTTAATGGACCGAACGTTATCCAATATGATGTGCCATCATACAGACAATTAAGTGTCACACGTGATATTGG
ATTAGACTCATTCATGAATGGGTTGTGTCAAGGGTTGGGAATCCAAAGAAATGAAGGATTGGAGGTGATTTATAGACACGGAAATATTGGAGTTAATGGGAATATTATAT
ATGCCCCTATCACCATAAGAAGTGATGTAGAATTTAATTTTATGACTGCTCTTGCTCCTCCTCTACCACATACAATAGAGTTGTATGTGTCTCAAATTTACATGGATACC
ACAGTTGGAGGGGAAAAGAGAGTCACTCATGATGAATGTAGAGTCACCAATGAAGAAACTTGCATTAATATGAATGATGACAACGATGAAGATGATCATGAATTCTTTTA
TGGGACAGAAGAAGTACCTGAATTTTTTACCACTTTAGACATGACAGTTATTAACTCTCTTCCAGACTCTGGGATTGAATTAGAAGCTAGAGAACCAGATGGACTAATGA
AAGGGATGATGTTTGAGACAAAGAAAGATCTAAAAAATGCTGTAAAAAGTTATTCAGTTCTACATCATCAACATTTTAATGTCATTGAGGAAAAGGGTCGTCCTTGTTCA
TCTCGCATTCGAAATGAGATGGATTGGAAGGAGCCAATTGTGAAACACAATTGTGGAATATGTGGAATTGAAGGACATAATCGTCGAAAATGTCCTCATGCTGGCGCTCA
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTGGATTTAGTATTTATATGAATGGAAACATAGTTAATGGACCGAACGTTATCCAATATGATGTGCCATCATACAGACAATTAAGTGTCACACGTGATATTGG
ATTAGACTCATTCATGAATGGGTTGTGTCAAGGGTTGGGAATCCAAAGAAATGAAGGATTGGAGGTGATTTATAGACACGGAAATATTGGAGTTAATGGGAATATTATAT
ATGCCCCTATCACCATAAGAAGTGATGTAGAATTTAATTTTATGACTGCTCTTGCTCCTCCTCTACCACATACAATAGAGTTGTATGTGTCTCAAATTTACATGGATACC
ACAGTTGGAGGGGAAAAGAGAGTCACTCATGATGAATGTAGAGTCACCAATGAAGAAACTTGCATTAATATGAATGATGACAACGATGAAGATGATCATGAATTCTTTTA
TGGGACAGAAGAAGTACCTGAATTTTTTACCACTTTAGACATGACAGTTATTAACTCTCTTCCAGACTCTGGGATTGAATTAGAAGCTAGAGAACCAGATGGACTAATGA
AAGGGATGATGTTTGAGACAAAGAAAGATCTAAAAAATGCTGTAAAAAGTTATTCAGTTCTACATCATCAACATTTTAATGTCATTGAGGAAAAGGGTCGTCCTTGTTCA
TCTCGCATTCGAAATGAGATGGATTGGAAGGAGCCAATTGTGAAACACAATTGTGGAATATGTGGAATTGAAGGACATAATCGTCGAAAATGTCCTCATGCTGGCGCTCA
ATGA
Protein sequenceShow/hide protein sequence
MEVGFSIYMNGNIVNGPNVIQYDVPSYRQLSVTRDIGLDSFMNGLCQGLGIQRNEGLEVIYRHGNIGVNGNIIYAPITIRSDVEFNFMTALAPPLPHTIELYVSQIYMDT
TVGGEKRVTHDECRVTNEETCINMNDDNDEDDHEFFYGTEEVPEFFTTLDMTVINSLPDSGIELEAREPDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEKGRPCS
SRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ