; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0018549 (gene) of Chayote v1 genome

Gene IDSed0018549
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L4
Genome locationLG05:45338767..45339308
RNA-Seq ExpressionSed0018549
SyntenySed0018549
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002136 - Ribosomal protein L4/L1e
IPR013005 - 50S ribosomal protein uL4
IPR023574 - Ribosomal protein L4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022948154.1 50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita moschata]1.1e-2575.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

XP_022948155.1 50S ribosomal protein L4, chloroplastic-like isoform X2 [Cucurbita moschata]1.1e-2575.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

XP_023007555.1 50S ribosomal protein L4, chloroplastic-like isoform X1 [Cucurbita maxima]1.1e-2575.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

XP_023532270.1 50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-2575.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

XP_038902816.1 50S ribosomal protein L4, chloroplastic [Benincasa hispida]1.1e-2575.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

TrEMBL top hitse value%identityAlignment
A0A6J1D3V7 50S ribosomal protein L4, chloroplastic5.4e-2675.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

A0A6J1G8Y3 50S ribosomal protein L4, chloroplastic-like isoform X25.4e-2675.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

A0A6J1G917 50S ribosomal protein L4, chloroplastic-like isoform X15.4e-2675.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

A0A6J1KZ16 50S ribosomal protein L4, chloroplastic-like isoform X25.4e-2675.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

A0A6J1L3A5 50S ribosomal protein L4, chloroplastic-like isoform X15.4e-2675.28Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        +QQ KTGKARRGS R PLRPGGGVV+ PKPR WSIKINRK   LAIST     AVNTI VED GDKFEKPK KEF+ ALKRWGI+ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAIST-----AVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

SwissProt top hitse value%identityAlignment
B0C1D4 50S ribosomal protein L49.3e-1546.07Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAISTAV-----NTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        ++Q  TG+AR GS+R+PL  GGGV++ PKPR +S K+NRK   LA+ TA      + + VED GD   +PK K+ ++A+ RWG+N   K
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAISTAV-----NTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

O49937 50S ribosomal protein L4, chloroplastic3.3e-2052.81Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKIN---RKLAISTAV-----NTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG+ARRGS  +PLRPGGGV++ PKPR W+IK+N   R+LA+STA+     N+  VE+  + FEKPK K+F+ A++RWG++  EK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKIN---RKLAISTAV-----NTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

O50061 50S ribosomal protein L4, chloroplastic2.1e-2258.7Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG ARRGS R PLRPGGGVV+ P+P+ WSIKINR   KLAISTA+++        I VE+ G+KFEKPK K+F+ A++RWG++ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

O80361 50S ribosomal protein L4, chloroplastic7.6e-2562.92Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAISTAV-----NTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG+ARRGS R PLRPGGGVV+ PKP+ WS+KIN+K   LAISTA+     NTI VE+  DKFEKPK KEF+D ++RWG++ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAISTAV-----NTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

Q110A8 50S ribosomal protein L47.1e-1549.44Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAISTAVNT-----IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        ++Q  TG+AR GS R+PL  GGGV++ PKPR +S K+NRK   LA+STA  +     I +ED  ++F KPK KE V A+ RWGI+ + K
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRK---LAISTAVNT-----IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

Arabidopsis top hitse value%identityAlignment
AT1G07320.1 ribosomal protein L41.5e-2358.7Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG ARRGS R PLRPGGGVV+ P+P+ WSIKINR   KLAISTA+++        I VE+ G+KFEKPK K+F+ A++RWG++ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

AT1G07320.2 ribosomal protein L41.5e-2358.7Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG ARRGS R PLRPGGGVV+ P+P+ WSIKINR   KLAISTA+++        I VE+ G+KFEKPK K+F+ A++RWG++ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

AT1G07320.3 ribosomal protein L41.5e-2358.7Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG ARRGS R PLRPGGGVV+ P+P+ WSIKINR   KLAISTA+++        I VE+ G+KFEKPK K+F+ A++RWG++ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

AT1G07320.4 ribosomal protein L41.5e-2358.7Show/hide
Query:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK
        + Q KTG ARRGS R PLRPGGGVV+ P+P+ WSIKINR   KLAISTA+++        I VE+ G+KFEKPK K+F+ A++RWG++ KEK
Subjt:  FQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINR---KLAISTAVNT--------IAVEDSGDKFEKPKAKEFVDALKRWGINHKEK

AT2G20060.1 Ribosomal protein L4/L1 family3.4e-0435.29Show/hide
Query:  SISFFNSSSQPKFQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKIN---RKLAISTAVNTIAVE
        ++S  + + +  + Q  TG+AR G+ R P   GG V++ PKPR  +IK+N   R+L +  A+   A E
Subjt:  SISFFNSSSQPKFQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKIN---RKLAISTAVNTIAVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACATCCACGACGCCATTGTCGATCTCCTTCTTCAATTCATCCAGCCAACCAAAATTCCAACAGACGAAAACCGGGAAGGCCCGTCGCGGTTCGACGCGTAATCC
TCTTCGGCCTGGCGGAGGTGTGGTTTACGATCCGAAACCTAGGGTTTGGTCCATTAAGATCAACAGAAAATTGGCGATTTCGACGGCGGTAAATACGATCGCGGTGGAAG
ATTCTGGTGACAAGTTTGAGAAGCCGAAAGCTAAAGAGTTCGTTGATGCGCTGAAGAGATGGGGAATCAATCATAAGGAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACATCCACGACGCCATTGTCGATCTCCTTCTTCAATTCATCCAGCCAACCAAAATTCCAACAGACGAAAACCGGGAAGGCCCGTCGCGGTTCGACGCGTAATCC
TCTTCGGCCTGGCGGAGGTGTGGTTTACGATCCGAAACCTAGGGTTTGGTCCATTAAGATCAACAGAAAATTGGCGATTTCGACGGCGGTAAATACGATCGCGGTGGAAG
ATTCTGGTGACAAGTTTGAGAAGCCGAAAGCTAAAGAGTTCGTTGATGCGCTGAAGAGATGGGGAATCAATCATAAGGAGAAATAA
Protein sequenceShow/hide protein sequence
MATSTTPLSISFFNSSSQPKFQQTKTGKARRGSTRNPLRPGGGVVYDPKPRVWSIKINRKLAISTAVNTIAVEDSGDKFEKPKAKEFVDALKRWGINHKEK