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Sed0018559 (gene) of Chayote v1 genome

Gene IDSed0018559
OrganismSechium edule (Chayote v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationLG14:2911930..2912383
RNA-Seq ExpressionSed0018559
SyntenySed0018559
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595160.1 hypothetical protein SDJN03_11713, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3661.49Show/hide
Query:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA---AAVVNSPTAAS---SGCQISIRNRLV
        MADSAA   Y         L R  +IPS A+ P           SPI+LR++S  S+S+SYTSL+DILPSA   AA  NSPTAAS   SG +ISIRNRLV
Subjt:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA---AAVVNSPTAAS---SGCQISIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        KQAAWAYLQPMSASSYS G NF HRFWLRFS  NP+A  LGFI G IIPA++R +RFCICL
Subjt:  KQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

KAG7027175.1 hypothetical protein SDJN02_11186, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3661.49Show/hide
Query:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA---AAVVNSPTAAS---SGCQISIRNRLV
        MADSAA   Y         L R  +IPS A+ P           SPI+LR++S  S+S+SYTSL+DILPSA   AA  NSPTAAS   SG +ISIRNRLV
Subjt:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA---AAVVNSPTAAS---SGCQISIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        KQAAWAYLQPMSASSYS G NF HRFWLRFS  NP+A  LGFI G IIPA++R +RFCICL
Subjt:  KQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

XP_022963126.1 uncharacterized protein LOC111463426 [Cucurbita moschata]6.4e-3762.26Show/hide
Query:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA-AAVVNSPTAAS---SGCQISIRNRLVKQ
        MADSAA   Y         L R  +IPS A+ P           SPI+LR++S  S+S+SYTSL+DILPSA AA  NSPTAAS   SG +ISIRNRLVKQ
Subjt:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA-AAVVNSPTAAS---SGCQISIRNRLVKQ

Query:  AAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        AAWAYLQPMSASSYS G NF HRFWLRFS  NP+A  LGFI G IIPA++R +RFCICL
Subjt:  AAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

XP_022979075.1 uncharacterized protein LOC111478820 [Cucurbita maxima]1.4e-3668.66Show/hide
Query:  SAASPPYLRRGITIPSVAVTPSPINLRLIS-SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFW
        S+A PP  + G   P  A  PSPI+LRL+S S+S+SYTSL+DILPS+A  VNSPTAAS   SG +I IRNRLVKQAAWAYLQPMSASSYSAGPN  HRFW
Subjt:  SAASPPYLRRGITIPSVAVTPSPINLRLIS-SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFW

Query:  LRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        LRFS GNP++ CLGFI G IIP++IR  R CIC+
Subjt:  LRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

XP_038883302.1 uncharacterized protein LOC120074291 [Benincasa hispida]6.2e-4080Show/hide
Query:  PSPINLRLIS--SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGR
        PSPINLRL+S  S+S+SYTSL+DILPSA+A VNSPTAAS   SG +ISIRNRLVKQAAWAYLQPMSASSYSAGPNF HRFWLRFS  NP+ GCLGFI G 
Subjt:  PSPINLRLIS--SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGR

Query:  IIPAVIRAVRFCICL
        IIPA+IR  RFCICL
Subjt:  IIPAVIRAVRFCICL

TrEMBL top hitse value%identityAlignment
A0A6J1BX34 uncharacterized protein LOC1110055101.2e-3665.75Show/hide
Query:  SPPYLRRGITIP---SVAVT-----------PSPINLRLIS--SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASS
        SPP LRR  +IP   S A+T           PSPI+LRL+S  S+S+SYTSL+DILPS AA VNSPTAAS   SG +ISIRNRLVKQAAWAYLQPMSASS
Subjt:  SPPYLRRGITIP---SVAVT-----------PSPINLRLIS--SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASS

Query:  YSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        YSAGPNF HR  LR S GNP+  CLGFI G +IPA++R +R CICL
Subjt:  YSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

A0A6J1EDY2 uncharacterized protein LOC1114333191.3e-3567.91Show/hide
Query:  SAASPPYLRRGITIPSVAVTPSPINLRLIS-SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFW
        S+A PP  + G   P  A  PSPI+LRL+S S+S+SYTSL+DILPS+A  VNSPTAAS   SG +I IRNRLVKQAAWAYLQPMSASSYSAGPN  H  W
Subjt:  SAASPPYLRRGITIPSVAVTPSPINLRLIS-SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFW

Query:  LRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        LRFS GNP++ CLGFI G IIP++IR  R CICL
Subjt:  LRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

A0A6J1HF81 uncharacterized protein LOC1114634263.1e-3762.26Show/hide
Query:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA-AAVVNSPTAAS---SGCQISIRNRLVKQ
        MADSAA   Y         L R  +IPS A+ P           SPI+LR++S  S+S+SYTSL+DILPSA AA  NSPTAAS   SG +ISIRNRLVKQ
Subjt:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLIS--SNSKSYTSLRDILPSA-AAVVNSPTAAS---SGCQISIRNRLVKQ

Query:  AAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        AAWAYLQPMSASSYS G NF HRFWLRFS  NP+A  LGFI G IIPA++R +RFCICL
Subjt:  AAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

A0A6J1I5R0 uncharacterized protein LOC1114712765.8e-3661.39Show/hide
Query:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLISSNS--KSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQA
        MADSAA   Y         L R  +IPS A+ P           SPI+LR++SS S  +SYTSL+DILPSAA   NSPTAAS   SG +ISIRNRLVKQA
Subjt:  MADSAASPPY---------LRRGITIPSVAVTP-----------SPINLRLISSNS--KSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQA

Query:  AWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        AWAYLQPMSASSYS G N  HRFWLRFS  NP+A  LGFI G IIPA++R +RFCICL
Subjt:  AWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

A0A6J1IS66 uncharacterized protein LOC1114788206.9e-3768.66Show/hide
Query:  SAASPPYLRRGITIPSVAVTPSPINLRLIS-SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFW
        S+A PP  + G   P  A  PSPI+LRL+S S+S+SYTSL+DILPS+A  VNSPTAAS   SG +I IRNRLVKQAAWAYLQPMSASSYSAGPN  HRFW
Subjt:  SAASPPYLRRGITIPSVAVTPSPINLRLIS-SNSKSYTSLRDILPSAAAVVNSPTAAS---SGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFW

Query:  LRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL
        LRFS GNP++ CLGFI G IIP++IR  R CIC+
Subjt:  LRFSGGNPMAGCLGFIGGRIIPAVIRAVRFCICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein5.4e-1049.4Show/hide
Query:  INLRLISSNSKS------YTSLRDILPSAAAVVNSP------TAASSGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHR
        ++L L+S N  S      YTSL+DILPS++  V+SP       +A SG  I+IRNRLVKQAA +YLQP S  + S+ P+FL R
Subjt:  INLRLISSNSKS------YTSLRDILPSAAAVVNSP------TAASSGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHR

AT5G06280.1 unknown protein7.9e-0944.79Show/hide
Query:  PSPINLRLIS---SNSKSYTSLRDILPSA------AAVVN---SPTAASSGCQISIRNRLVKQAAWAYLQP--MSASSYSAGPNFLHRFWLRFSGG
        PS  +  LIS   S+  +YTSLRDI+ S          +N   SP  +++   ISIRNRLVKQAA +YLQP  +++S  SAG  F  R WL  S G
Subjt:  PSPINLRLIS---SNSKSYTSLRDILPSA------AAVVN---SPTAASSGCQISIRNRLVKQAAWAYLQP--MSASSYSAGPNFLHRFWLRFSGG

AT5G06280.3 unknown protein7.9e-0944.79Show/hide
Query:  PSPINLRLIS---SNSKSYTSLRDILPSA------AAVVN---SPTAASSGCQISIRNRLVKQAAWAYLQP--MSASSYSAGPNFLHRFWLRFSGG
        PS  +  LIS   S+  +YTSLRDI+ S          +N   SP  +++   ISIRNRLVKQAA +YLQP  +++S  SAG  F  R WL  S G
Subjt:  PSPINLRLIS---SNSKSYTSLRDILPSA------AAVVN---SPTAASSGCQISIRNRLVKQAAWAYLQP--MSASSYSAGPNFLHRFWLRFSGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATTCCGCCGCGTCGCCGCCGTACCTCCGCCGTGGAATCACGATTCCCTCCGTCGCCGTCACGCCGTCGCCGATCAACCTGCGCCTCATCTCCTCCAACTCCAA
GTCCTACACCTCTCTCAGGGACATCCTCCCCTCCGCCGCCGCCGTCGTCAACTCTCCCACCGCCGCCTCCTCCGGCTGCCAAATCTCGATCCGCAACCGCCTCGTTAAGC
AAGCTGCCTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCGCCGGCCCTAATTTCCTCCACCGTTTCTGGCTCCGATTCTCCGGCGGAAATCCGATGGCCGGT
TGTCTCGGATTCATCGGCGGTAGAATTATTCCGGCCGTAATCCGAGCGGTTCGATTCTGCATTTGCTTGTGA
mRNA sequenceShow/hide mRNA sequence
CTTTTCTCTCTATTATTCTTTTTTCTTCCTCTTCCATGGCCGATTCCGCCGCGTCGCCGCCGTACCTCCGCCGTGGAATCACGATTCCCTCCGTCGCCGTCACGCCGTCG
CCGATCAACCTGCGCCTCATCTCCTCCAACTCCAAGTCCTACACCTCTCTCAGGGACATCCTCCCCTCCGCCGCCGCCGTCGTCAACTCTCCCACCGCCGCCTCCTCCGG
CTGCCAAATCTCGATCCGCAACCGCCTCGTTAAGCAAGCTGCCTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCGCCGGCCCTAATTTCCTCCACCGTTTCT
GGCTCCGATTCTCCGGCGGAAATCCGATGGCCGGTTGTCTCGGATTCATCGGCGGTAGAATTATTCCGGCCGTAATCCGAGCGGTTCGATTCTGCATTTGCTTGTGATTG
GCGTATTATTGACC
Protein sequenceShow/hide protein sequence
MADSAASPPYLRRGITIPSVAVTPSPINLRLISSNSKSYTSLRDILPSAAAVVNSPTAASSGCQISIRNRLVKQAAWAYLQPMSASSYSAGPNFLHRFWLRFSGGNPMAG
CLGFIGGRIIPAVIRAVRFCICL