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Sed0018564 (gene) of Chayote v1 genome

Gene IDSed0018564
OrganismSechium edule (Chayote v1)
DescriptionT3P18.3
Genome locationLG07:4951550..4952032
RNA-Seq ExpressionSed0018564
SyntenySed0018564
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]7.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
XP_016902203.1 PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]7.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
XP_016902205.1 PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]7.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]3.9e-4162Show/hide
Query:  PSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPC-PTKFLPSS--FSLENSSSIPASPPLVVNPEYKFWV
        P+  +   A+ +   F SPPLNQLL QIT+IKMD+ NFLLWQNLALPILRSY+LFDYLTGDKPC PT  +P+    ++E S+S  +SP L  NP Y+ W+
Subjt:  PSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPC-PTKFLPSS--FSLENSSSIPASPPLVVNPEYKFWV

Query:  VMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        V+D+LLLGWLYNSM  +VA QVMG+ TS +LW AVQ LFGVQS+AE  YL
Subjt:  VMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]1.6e-2950Show/hide
Query:  NTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENSSSIPASPPLVVNPEYKFWVVMDQLLLGWLYNSM
        +T  F +PPLNQ+L Q+ ++K+D+ N+LLWQ LALPIL+SY+L  +LT +  CP KF+ +     +S S        VNP++  WV  D LLLGW+YNSM
Subjt:  NTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENSSSIPASPPLVVNPEYKFWVVMDQLLLGWLYNSM

Query:  IVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
          EVA Q+MG++T+ DLW+A+Q LFGVQ +AE  +L
Subjt:  IVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X13.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X43.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
A0A1S4E1V2 uncharacterized protein LOC107991581 isoform X33.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
A0A1S4E2K3 uncharacterized protein LOC107991581 isoform X53.7e-2949.3Show/hide
Query:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG
        F +PPLNQ+L Q+TT+K+D++N+LLW+ LALPIL+ Y+L  +LT + PCP+ F+ S+ S   +       ++I AS    P +VNP ++ WV  D LLLG
Subjt:  FVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENS-------SSIPAS---PPLVVNPEYKFWVVMDQLLLG

Query:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        WLYNSM  +VA Q+MG+    DLW A Q  FGVQS+AE  +L
Subjt:  WLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
A0A6J1DCW4 uncharacterized protein LOC1110195981.9e-4162Show/hide
Query:  PSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPC-PTKFLPSS--FSLENSSSIPASPPLVVNPEYKFWV
        P+  +   A+ +   F SPPLNQLL QIT+IKMD+ NFLLWQNLALPILRSY+LFDYLTGDKPC PT  +P+    ++E S+S  +SP L  NP Y+ W+
Subjt:  PSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPC-PTKFLPSS--FSLENSSSIPASPPLVVNPEYKFWV

Query:  VMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
        V+D+LLLGWLYNSM  +VA QVMG+ TS +LW AVQ LFGVQS+AE  YL
Subjt:  VMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCGCTCCTACCGTCACCACCCCTGCTGGCAATCCGTCTTCGACCATACCTGTTCTGGCGATCGGCAACACGGAAACCTTCGTCAGCCCACCCTTAAATCAGCT
TCTTACTCAAATCACGACCATAAAAATGGATCAGGAAAATTTTCTCCTCTGGCAAAATCTTGCCCTACCCATCCTTCGGAGCTATCGGTTGTTTGACTACCTTACCGGAG
ACAAACCCTGCCCGACCAAATTTCTTCCCTCATCATTCTCTCTGGAAAATTCGAGCTCTATTCCAGCCTCGCCTCCACTGGTTGTTAACCCAGAATACAAATTTTGGGTG
GTTATGGATCAATTACTGCTTGGATGGTTGTATAACTCCATGATAGTTGAAGTGGCGACTCAGGTGATGGGATATCATACCTCTGCTGATCTTTGGCAAGCTGTTCAACG
GTTATTTGGGGTTCAATCAAAAGCTGAAACAGCTTATTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCGCTCCTACCGTCACCACCCCTGCTGGCAATCCGTCTTCGACCATACCTGTTCTGGCGATCGGCAACACGGAAACCTTCGTCAGCCCACCCTTAAATCAGCT
TCTTACTCAAATCACGACCATAAAAATGGATCAGGAAAATTTTCTCCTCTGGCAAAATCTTGCCCTACCCATCCTTCGGAGCTATCGGTTGTTTGACTACCTTACCGGAG
ACAAACCCTGCCCGACCAAATTTCTTCCCTCATCATTCTCTCTGGAAAATTCGAGCTCTATTCCAGCCTCGCCTCCACTGGTTGTTAACCCAGAATACAAATTTTGGGTG
GTTATGGATCAATTACTGCTTGGATGGTTGTATAACTCCATGATAGTTGAAGTGGCGACTCAGGTGATGGGATATCATACCTCTGCTGATCTTTGGCAAGCTGTTCAACG
GTTATTTGGGGTTCAATCAAAAGCTGAAACAGCTTATTTGTAG
Protein sequenceShow/hide protein sequence
MSSAPTVTTPAGNPSSTIPVLAIGNTETFVSPPLNQLLTQITTIKMDQENFLLWQNLALPILRSYRLFDYLTGDKPCPTKFLPSSFSLENSSSIPASPPLVVNPEYKFWV
VMDQLLLGWLYNSMIVEVATQVMGYHTSADLWQAVQRLFGVQSKAETAYL