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Sed0018625 (gene) of Chayote v1 genome

Gene IDSed0018625
OrganismSechium edule (Chayote v1)
DescriptionCRG16
Genome locationLG13:23449812..23450643
RNA-Seq ExpressionSed0018625
SyntenySed0018625
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591454.1 hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1172.31Show/hide
Query:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
        MAA S  SF+A+ AVLF V+SVA  QSAESPAP PASPA S+VPSL+ AC GAFVAL+FGSA KA
Subjt:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
KAG6598305.1 hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia]2.7e-0459.02Show/hide
Query:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGS
        MA  S AS +A+ A++FAV SVAA    E+PAP PASPA S+ PS   AC  AFVAL FGS
Subjt:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGS
KAG6624490.1 hypothetical protein CIPAW_16G030400 [Carya illinoinensis]6.0e-0455.38Show/hide
Query:  AFSNASFLAIAAVLFAVLSV---AAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARK
        A S AS +A+ AV FA+LS+   A  Q+ E+P+P P SPA S  PSL FA  GAFVAL FGS R+
Subjt:  AFSNASFLAIAAVLFAVLSV---AAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARK
KAG7024335.1 hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1172.31Show/hide
Query:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
        MAA S  SF+A+ AVLF V+SVA  QSAESPAP PASPA S+VPSL+ AC GAFVAL+FGSA KA
Subjt:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
KGN55315.1 hypothetical protein Csa_012200 [Cucumis sativus]6.3e-1478.46Show/hide
Query:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
        MAA S  SF+A+ AVLFAVLSVA  QSAESPAPPPASPA S+VPSL+FAC GAF+ALLFGSA KA
Subjt:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
TrEMBL top hitse value%identityAlignment
A0A0A0LKU1 Uncharacterized protein8.4e-0457.38Show/hide
Query:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGS
        MAA S  S LA+ A++FA+ SVAA    E+PAP PASPA S+ PS   AC  AF+AL FGS
Subjt:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGS
A0A2P5EL16 Arabinogalactan peptide6.4e-0457.81Show/hide
Query:  MAAF-SNASFLAIAAVLFAVLS-VAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSA
        MAAF SNAS + + AV+  VLS V A  +AE+PAP PASPA+++ PS   AC  A VAL+FGSA
Subjt:  MAAF-SNASFLAIAAVLFAVLS-VAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSA
Q96504 CRG163.1e-1478.46Show/hide
Query:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
        MAA S  SF+A+ AVLFAVLSVA  QSAESPAPPPASPA S+VPSL+FAC GAF+ALLFGSA KA
Subjt:  MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCTTCTCCAACGCTTCCTTCCTGGCGATTGCCGCCGTCCTCTTCGCCGTGCTCTCCGTCGCCGCCGGGCAATCCGCCGAGTCTCCTGCTCCGCCGCCGGCCTC
TCCGGCTGCCTCCCTCGTCCCGTCGCTGACCTTCGCCTGCGCCGGTGCTTTCGTCGCTCTTCTCTTCGGATCTGCACGCAAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
CCAAACCTCATTTCATCATCTTCAACAATCCCTCAATTTTCCCCTCAAAAACCCTAGAAATTTTCTGAGCAATGGCCGCCTTCTCCAACGCTTCCTTCCTGGCGATTGCC
GCCGTCCTCTTCGCCGTGCTCTCCGTCGCCGCCGGGCAATCCGCCGAGTCTCCTGCTCCGCCGCCGGCCTCTCCGGCTGCCTCCCTCGTCCCGTCGCTGACCTTCGCCTG
CGCCGGTGCTTTCGTCGCTCTTCTCTTCGGATCTGCACGCAAGGCTTGAGCGTATGGCATTGATGTTTCTATGCGTTTTCTCTGATTCGGTACGGATGCTCGATTTCTGA
GGGGTTTATTGAGTGTATATGATTTTTATATTCGATTCTTAGGGTTTATTAGTCGTTACTGGTTTGTATTGATCTATTCTTTGTTTGTTGTCTCGTTGTTCTTCGTATGA
ATCGACATTATTTGAGTATATAAATTATTTCAGATTTCTACTCTCTGTTTTTGTGGTGTCTAAGATCATTCATTTCATTTCTAGTGAGATTTGTGTTGAGATGTGCATTG
AAGAATGATGTTTCACCATTAATTAGTGGGAGTTGAGACTTCACTACCTAAACCCTCTTAGGGTGAGTGAGTTTGGAGTAATCGTTTGGTTATTATAAACGGTGTTCATA
GGATTTGTTATGTACCAAAAGGTAATACAGATTATACACGTTGAGATATACAAGTACGTAGGTTTAGATTAACTGACAAGTAAGTTTAGATAACCACCATAATAAATAAT
GAGTCAAATATTGGTTGGATTATTATAACTAACCCGGCTGTTTACATAAACTCCAAACACGC
Protein sequenceShow/hide protein sequence
MAAFSNASFLAIAAVLFAVLSVAAGQSAESPAPPPASPAASLVPSLTFACAGAFVALLFGSARKA