CuGenDBv2

Gene ID	Sed0018645
Organism	Sechium edule (Chayote v1)
Description	F-box protein SNE-like
Genome location	LG05:40955283..40956281
RNA-Seq Expression	Sed0018645
Synteny	Sed0018645
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140002.1 F-box protein SNE [Cucumis sativus]

9.7e-66

84.31

Show/hide

Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+VCFRHV SPLPSSV++VVAALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV
        S++V RRVWTQDEVQLSLSLFCVDYYERL G+GR   +ASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV

XP_022943904.1 F-box protein SNE-like [Cucurbita moschata]

4.8e-65

81.94

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Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLG+A CVCRLWC I RSESVWE+VCFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR-----DASALSLMFLCNTVNV
        S+++ RRVWTQ+EVQLSLSLFCVDYYERL G GR     DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR-----DASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

6.7e-67

86.93

Show/hide

Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+ NEKRRK  INDNLDILIEILKRLDGPSLGVAACVCRLWC I R+ESVWE VCFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV
        SEVV RRVWTQDEVQLSLSLFCVDYYERL G+GR   DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV

XP_022985800.1 F-box protein SNE-like [Cucurbita maxima]

2.8e-65

83.12

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Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+VCFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR----DASALSLMFLCNTVNV
        S+++ RRVWTQ+EVQLSLSLFCVDYYERL G GR    DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR----DASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

3.0e-67

86.27

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Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+VCFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV
        S++V RRVWTQDEVQLSLSLFCVDYYERL G+GR   DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

4.7e-66

84.31

Show/hide

Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+VCFRHV SPLPSSV++VVAALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV
        S++V RRVWTQDEVQLSLSLFCVDYYERL G+GR   +ASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV

A0A6J1FVJ9 F-box protein SNE-like

2.3e-65

81.94

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Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLG+A CVCRLWC I RSESVWE+VCFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR-----DASALSLMFLCNTVNV
        S+++ RRVWTQ+EVQLSLSLFCVDYYERL G GR     DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR-----DASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

3.3e-67

86.93

Show/hide

Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+ NEKRRK  INDNLDILIEILKRLDGPSLGVAACVCRLWC I R+ESVWE VCFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV
        SEVV RRVWTQDEVQLSLSLFCVDYYERL G+GR   DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

3.3e-67

86.93

Show/hide

Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+ NEKRRK  INDNLDILIEILKRLDGPSLGVAACVCRLWC I R+ESVWE VCFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV
        SEVV RRVWTQDEVQLSLSLFCVDYYERL G+GR   DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR---DASALSLMFLCNTVNV

A0A6J1JCA9 F-box protein SNE-like

1.4e-65

83.12

Show/hide

Query:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC
        ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+VCFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  
Subjt:  LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRC

Query:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR----DASALSLMFLCNTVNV
        S+++ RRVWTQ+EVQLSLSLFCVDYYERL G GR    DASALSLMFLCNTVNV
Subjt:  SEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR----DASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

3.8e-12

34.43

Show/hide

Query:  DILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSP--LPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQ-------DE
        D++ E+L+R +  +L  AACV R W ++   E +WE  C R   +       +R+VV +LGG++RL+ V IRP+  + R + V R++   Q       D+
Subjt:  DILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSP--LPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQ-------DE

Query:  VQLSLSLFCVDYYERLAGTGRD
        VQLSLSLF + +++ +    +D
Subjt:  VQLSLSLFCVDYYERLAGTGRD

Q9LUB6 F-box protein SNE

3.2e-35

55.48

Show/hide

Query:  VPDPNEKRRKI------SINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPS-SVRSVVAALGGYKRLYMVSIRPVLSRL
        V   N KR+++      SIND+ D+L+EIL+RLDG SL  AACVCRLW  + R++S+WEE+CFR V SP PS S+RSVV+ALGGY+ LY + IRPVL+RL
Subjt:  VPDPNEKRRKI------SINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPS-SVRSVVAALGGYKRLYMVSIRPVLSRL

Query:  RCSEVVRRRVWTQDEVQLSLSLFCVDYYERL---AGTGRDASALSLMFLCNTVNV
               + +WT+D++QLSLSL+CV YYERL   A  G DA   SL+FL   VNV
Subjt:  RCSEVVRRRVWTQDEVQLSLSLFCVDYYERL---AGTGRDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

6.9e-14

35.59

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Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTS--PLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQL
        NLD  ++ E+LK +D  +L +++CV ++W +  + E +WE +C RH T+     + +RSVV ALGG++RL+ + + P+      S+   R  + +DE++L
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTS--PLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQL

Query:  SLSLFCVDYYERLAGTGR
        +LSL  + YYE+++ T R
Subjt:  SLSLFCVDYYERLAGTGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

4.9e-15

35.59

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTS--PLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQL
        NLD  ++ E+LK +D  +L +++CV ++W +  + E +WE +C RH T+     + +RSVV ALGG++RL+ + + P+      S+   R  + +DE++L
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTS--PLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQL

Query:  SLSLFCVDYYERLAGTGR
        +LSL  + YYE+++ T R
Subjt:  SLSLFCVDYYERLAGTGR

AT5G48170.1 F-box family protein

2.3e-36

55.48

Show/hide

Query:  VPDPNEKRRKI------SINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPS-SVRSVVAALGGYKRLYMVSIRPVLSRL
        V   N KR+++      SIND+ D+L+EIL+RLDG SL  AACVCRLW  + R++S+WEE+CFR V SP PS S+RSVV+ALGGY+ LY + IRPVL+RL
Subjt:  VPDPNEKRRKI------SINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPS-SVRSVVAALGGYKRLYMVSIRPVLSRL

Query:  RCSEVVRRRVWTQDEVQLSLSLFCVDYYERL---AGTGRDASALSLMFLCNTVNV
               + +WT+D++QLSLSL+CV YYERL   A  G DA   SL+FL   VNV
Subjt:  RCSEVVRRRVWTQDEVQLSLSLFCVDYYERL---AGTGRDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTGAAGAAGAATCACGTACCCGATCCGAACGAGAAGCGGCGGAAGATCTCAATCAACGACAATCTCGACATTCTGATCGAGATCCTAAAGCGACTGGACGGACCGTC
GCTGGGCGTCGCGGCCTGCGTTTGCCGGCTCTGGTGCAGGATCGGGCGGAGCGAGTCGGTGTGGGAAGAGGTGTGCTTCCGGCACGTGACGTCGCCGCTGCCGTCGTCGG
TGAGATCGGTGGTGGCCGCGTTGGGAGGGTACAAGCGGCTGTATATGGTGAGCATTCGGCCGGTGCTGAGTCGGCTCCGGTGCTCGGAGGTGGTGCGGCGGCGGGTTTGG
ACTCAGGATGAGGTTCAGCTTTCTCTGTCGCTGTTCTGTGTGGATTATTACGAGCGCCTCGCTGGGACTGGCAGAGATGCGTCCGCATTGTCGCTCATGTTCCTCTGCAA
CACTGTGAACGTCTGA

mRNA sequence

Show/hide mRNA sequence

GTGATTTGGAGAATCCATCTCTCTTTGAAAGAGTGGTTCCCATGCCCAAAGTCTTGGAATATGCACACACAAACACTCCCTAAAATCAACTACAAATTATAAAAAGAAAG
CAAAGAAAGAGAAAGTTAAACAGCATTGGTTTGAGTTCTTATTTGGTTTGGATCTTCTTCCTTGGCCCCATCCCCTCCCTCCTCGATACCCTCTCTCAATCCTTCTCACA
GACATTTTCACAAACACGCGGACTTCGAGACGCACAGCAACACAAATCCTATCTTACACTTTTTCTCTATATACCACAGAGGCAGAGCATTTCGATTATAATTTCCACCT
ACCAAATCCCTAATCGTTTCATTTCTAGGGCAAAAACATAAACAATGCTGAAGAAGAATCACGTACCCGATCCGAACGAGAAGCGGCGGAAGATCTCAATCAACGACAAT
CTCGACATTCTGATCGAGATCCTAAAGCGACTGGACGGACCGTCGCTGGGCGTCGCGGCCTGCGTTTGCCGGCTCTGGTGCAGGATCGGGCGGAGCGAGTCGGTGTGGGA
AGAGGTGTGCTTCCGGCACGTGACGTCGCCGCTGCCGTCGTCGGTGAGATCGGTGGTGGCCGCGTTGGGAGGGTACAAGCGGCTGTATATGGTGAGCATTCGGCCGGTGC
TGAGTCGGCTCCGGTGCTCGGAGGTGGTGCGGCGGCGGGTTTGGACTCAGGATGAGGTTCAGCTTTCTCTGTCGCTGTTCTGTGTGGATTATTACGAGCGCCTCGCTGGG
ACTGGCAGAGATGCGTCCGCATTGTCGCTCATGTTCCTCTGCAACACTGTGAACGTCTGATTTGATCTCCTTCGTTTTTTTTATACTTTCTCCACCGTCGGATTTGTAGA
CCAGAAATCAAGCAAGGTCTGGTCATTTTAGTCAACGGGATTAAATTTGCCTGGTATGAAGATGAATATTATGATGATTGTTTCAATTACACGACGATTCTATTTTTATG
AAAAATAAC

Protein sequence

Show/hide protein sequence

MLKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVW
TQDEVQLSLSLFCVDYYERLAGTGRDASALSLMFLCNTVNV

Sed0018645 (gene) of Chayote v1 genome