; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0018681 (gene) of Chayote v1 genome

Gene IDSed0018681
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG04:24008617..24009166
RNA-Seq ExpressionSed0018681
SyntenySed0018681
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG70052.1 hypothetical protein EZV62_004987 [Acer yangbiense]1.5e-1437.24Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCV-----------LSYERLPDFCFTCGLIGHSTKECI--KATKNPSQ-NLF
        +N    + L E+I +++EL  D  + W G  IR++V ID+S+PL+  +R             L YERLPDFCF CG IGH  KEC+  +A K   + +  
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCV-----------LSYERLPDFCFTCGLIGHSTKECI--KATKNPSQ-NLF

Query:  SYGEWLKAQYIKRKIPRHKEEDNGNQSPNYGRSGSRWRKLDQEES
         +G+WLKAQ  +R +PR +   +G+ S        R + LD E+S
Subjt:  SYGEWLKAQYIKRKIPRHKEEDNGNQSPNYGRSGSRWRKLDQEES

XP_015382410.1 uncharacterized protein LOC107175497 [Citrus sinensis]6.9e-1542.31Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQH----------GIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGE
        M+ ++ + LGE IGS+ ++D D   N +G I R+R+ +D+++PL+            I   + YERLPDFCF CGLIGH  KECI+    P ++L  YG 
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQH----------GIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGE

Query:  WLKA
        W+KA
Subjt:  WLKA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]4.2e-2035.2Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKEC-----IKATKNPSQNL
        ++ E+  ILG ++G + E++ DG   W GP IR+RV ID+S+PL+ GI+          C L YE+LPDFC+ CG IGHS +EC     +  T +P Q  
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKEC-----IKATKNPSQNL

Query:  FSYGEWLKAQYIKRKIPRHKEE--------DNGNQSPNYGRSG--------SRWRKLDQEESYSRSDVARWRKEELISMKLKEDIAAKELEKRKIK
          YG+WL+A  +K+ +   +EE          G+Q  N GR G          WR +D  ES  R  V    +E +  +  +E + A E+  R+ K
Subjt:  FSYGEWLKAQYIKRKIPRHKEE--------DNGNQSPNYGRSG--------SRWRKLDQEESYSRSDVARWRKEELISMKLKEDIAAKELEKRKIK

XP_024037025.1 uncharacterized protein LOC112096996 [Citrus clementina]6.9e-1542.31Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQH----------GIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGE
        M+ ++ + LGE IGS+ ++D D   N +G I R+R+ +D+++PL+            I   + YERLPDFCF CGLIGH  KECI+    P ++L  YG 
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQH----------GIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGE

Query:  WLKA
        W+KA
Subjt:  WLKA

XP_024955847.1 uncharacterized protein LOC112498636 [Citrus sinensis]3.1e-1543.27Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPL----------QHGIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGE
        M+ ++ + LGE IGS+ E+D D   N +G I R+R+ +D+++PL          +  I   + YERLPDFCF CGLIGH  KECI+    P ++L  YG 
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPL----------QHGIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGE

Query:  WLKA
        W+KA
Subjt:  WLKA

TrEMBL top hitse value%identityAlignment
A0A5C7IND1 CCHC-type domain-containing protein7.4e-1537.24Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCV-----------LSYERLPDFCFTCGLIGHSTKECI--KATKNPSQ-NLF
        +N    + L E+I +++EL  D  + W G  IR++V ID+S+PL+  +R             L YERLPDFCF CG IGH  KEC+  +A K   + +  
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCV-----------LSYERLPDFCFTCGLIGHSTKECI--KATKNPSQ-NLF

Query:  SYGEWLKAQYIKRKIPRHKEEDNGNQSPNYGRSGSRWRKLDQEES
         +G+WLKAQ  +R +PR +   +G+ S        R + LD E+S
Subjt:  SYGEWLKAQYIKRKIPRHKEEDNGNQSPNYGRSGSRWRKLDQEES

A0A5C7IV30 CCHC-type domain-containing protein6.3e-1435.57Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCVLS-----------YERLPDFCFTCGLIGHSTKECIKATKNPSQ---NLF
        MN    K L E+IG++VEL  D  + W G  +R++V ID+S+PL+  +R  LS           YERLPDFC+ CG +GH  KEC            +  
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCVLS-----------YERLPDFCFTCGLIGHSTKECIKATKNPSQ---NLF

Query:  SYGEWLKAQYIKRKIPRHKEEDNGNQSPNYGRSGSRWRKLDQEESYSRS
         YG+WLKA  ++++  R + + +G+ S    R  S+ RK D     S +
Subjt:  SYGEWLKAQYIKRKIPRHKEEDNGNQSPNYGRSGSRWRKLDQEESYSRS

A0A6J1D765 uncharacterized protein LOC1110179022.0e-2035.2Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKEC-----IKATKNPSQNL
        ++ E+  ILG ++G + E++ DG   W GP IR+RV ID+S+PL+ GI+          C L YE+LPDFC+ CG IGHS +EC     +  T +P Q  
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKEC-----IKATKNPSQNL

Query:  FSYGEWLKAQYIKRKIPRHKEE--------DNGNQSPNYGRSG--------SRWRKLDQEESYSRSDVARWRKEELISMKLKEDIAAKELEKRKIK
          YG+WL+A  +K+ +   +EE          G+Q  N GR G          WR +D  ES  R  V    +E +  +  +E + A E+  R+ K
Subjt:  FSYGEWLKAQYIKRKIPRHKEE--------DNGNQSPNYGRSG--------SRWRKLDQEESYSRSDVARWRKEELISMKLKEDIAAKELEKRKIK

A0A7J8LUS3 Uncharacterized protein8.2e-1439.25Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQN--LFSY
        M+ +V   +G+ IG +V++DW          IRIRV ID+ +P +  +           CV+ YERLP FC+ CGLI HSTK+C +  ++   N   F Y
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQN--LFSY

Query:  GEWLKAQ
        G WL+AQ
Subjt:  GEWLKAQ

A0A7J8LUX2 Uncharacterized protein8.2e-1439.25Show/hide
Query:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQN--LFSY
        M+ +V   +G+ IG +V++DW          IRIRV ID+ +P +  +           CV+ YERLP FC+ CGLI HSTK+C +  ++   N   F Y
Subjt:  MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIR----------CVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQN--LFSY

Query:  GEWLKAQ
        G WL+AQ
Subjt:  GEWLKAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGGAAGTCACAAAGATTTTGGGAGAAGAAATTGGTTCAATTGTGGAGCTTGATTGGGATGGAACCAAAAATTGGATGGGACCAATTATTCGAATAAGAGTTGA
TATTGATTTGTCTCAGCCTTTACAACATGGTATCAGGTGTGTCCTATCCTATGAAAGATTGCCGGATTTCTGCTTTACCTGTGGATTGATAGGCCACTCGACTAAGGAAT
GTATTAAAGCCACCAAAAATCCTTCTCAAAACCTATTTTCATACGGCGAATGGCTTAAGGCCCAATATATTAAACGAAAAATTCCAAGACACAAAGAGGAGGATAATGGT
AACCAGAGCCCGAATTATGGAAGAAGTGGAAGCAGGTGGAGAAAATTGGATCAAGAAGAATCTTATTCAAGAAGTGATGTTGCTAGATGGAGGAAGGAGGAATTAATTTC
AATGAAATTAAAAGAAGATATTGCTGCTAAGGAATTGGAAAAAAGGAAAATTAAAGATAAGATAAAAGCAGATAACCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGGAAGTCACAAAGATTTTGGGAGAAGAAATTGGTTCAATTGTGGAGCTTGATTGGGATGGAACCAAAAATTGGATGGGACCAATTATTCGAATAAGAGTTGA
TATTGATTTGTCTCAGCCTTTACAACATGGTATCAGGTGTGTCCTATCCTATGAAAGATTGCCGGATTTCTGCTTTACCTGTGGATTGATAGGCCACTCGACTAAGGAAT
GTATTAAAGCCACCAAAAATCCTTCTCAAAACCTATTTTCATACGGCGAATGGCTTAAGGCCCAATATATTAAACGAAAAATTCCAAGACACAAAGAGGAGGATAATGGT
AACCAGAGCCCGAATTATGGAAGAAGTGGAAGCAGGTGGAGAAAATTGGATCAAGAAGAATCTTATTCAAGAAGTGATGTTGCTAGATGGAGGAAGGAGGAATTAATTTC
AATGAAATTAAAAGAAGATATTGCTGCTAAGGAATTGGAAAAAAGGAAAATTAAAGATAAGATAAAAGCAGATAACCTCTAG
Protein sequenceShow/hide protein sequence
MNLEVTKILGEEIGSIVELDWDGTKNWMGPIIRIRVDIDLSQPLQHGIRCVLSYERLPDFCFTCGLIGHSTKECIKATKNPSQNLFSYGEWLKAQYIKRKIPRHKEEDNG
NQSPNYGRSGSRWRKLDQEESYSRSDVARWRKEELISMKLKEDIAAKELEKRKIKDKIKADNL