CuGenDBv2

Gene ID	Sed0018725
Organism	Sechium edule (Chayote v1)
Description	light-harvesting complex-like protein OHP2, chloroplastic
Genome location	LG03:3041433..3044813
RNA-Seq Expression	Sed0018725
Synteny	Sed0018725
Gene Ontology terms	GO:0006850 - mitochondrial pyruvate transmembrane transport (biological process) GO:0009987 - cellular process (biological process) GO:0009507 - chloroplast (cellular component) GO:0009536 - plastid (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016020 - membrane (cellular component) GO:0031305 - integral component of mitochondrial inner membrane (cellular component) GO:0046872 - metal ion binding (molecular function) GO:0050833 - pyruvate transmembrane transporter activity (molecular function)
InterPro domains	IPR023329 - Chlorophyll a/b binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7016405.1 Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-53

70.31

Show/hide

Query:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA
        MSGACSIPF        +SSPA ASPS     SASS   H+S+RFSS+KPF+ TIRSSQTEGP+RRPAAPSLREPSP       PPL     PSQ+PPS 
Subjt:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA

Query:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
           AY AK DNVITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ    +   G V +E
Subjt:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

XP_022133509.1 light-harvesting complex-like protein OHP2, chloroplastic [Momordica charantia]

3.5e-54

68.45

Show/hide

Query:  MSGACSIPFTSSPA-AASPSP----SASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPPPLM----PSQSPP---------SAAASAY
        MSGACSIPF  +P+ A SPSP    SASS  PH S+RFSS+KPF+ TIRSSQTEGP+RRPAAPSLREPSPPP +    PSQSPP          ++  A+
Subjt:  MSGACSIPFTSSPA-AASPSP----SASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPPPLM----PSQSPP---------SAAASAY

Query:  GAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
         AKQDNVITLE QRQKAKELQE+FK KKL++A+QGPFFGFI KNEISNGRWAMFGFAVG+LTEYATGSNFVDQ    +   G V +E
Subjt:  GAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

XP_022939849.1 light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata]

1.3e-53

70.31

Show/hide

Query:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA
        MSGACSIPF        +SSPA ASPS     SASS   H+S+RFSS KPF+ TIRSSQTEGP+RRPAAPSLREPSP       PPL     PSQ+PPS 
Subjt:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA

Query:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
           AY AK DNVITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ    +   G V +E
Subjt:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

XP_023551626.1 light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo]

1.0e-53

70.31

Show/hide

Query:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA
        MSGACSIPF        +SSPA ASPS     SASS   H+S+RFSS+KPF+ TIRSSQTEGP+RRPAAPSLREPSP       PPL     PSQ+PPS 
Subjt:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA

Query:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
           AY AK DNVITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ    +   G V +E
Subjt:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

XP_038884716.1 light-harvesting complex-like protein OHP2, chloroplastic [Benincasa hispida]

3.5e-54

70.31

Show/hide

Query:  MSGACSIPF--------TSSPAA-----ASPSPSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPP----------PLMPSQSPPSA
        MSGACSIPF        +SSPAA     AS S SASS  PHTSLRFSS+KPF+ TIRSSQTEGP+RRPAAPSLREPSPP          P  P QSPPS 
Subjt:  MSGACSIPF--------TSSPAA-----ASPSPSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPP----------PLMPSQSPPSA

Query:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
         +     KQDNVITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ    +   G V +E
Subjt:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BW66 light-harvesting complex-like protein OHP2, chloroplastic

1.7e-54

68.45

Show/hide

Query:  MSGACSIPFTSSPA-AASPSP----SASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPPPLM----PSQSPP---------SAAASAY
        MSGACSIPF  +P+ A SPSP    SASS  PH S+RFSS+KPF+ TIRSSQTEGP+RRPAAPSLREPSPPP +    PSQSPP          ++  A+
Subjt:  MSGACSIPFTSSPA-AASPSP----SASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPPPLM----PSQSPP---------SAAASAY

Query:  GAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
         AKQDNVITLE QRQKAKELQE+FK KKL++A+QGPFFGFI KNEISNGRWAMFGFAVG+LTEYATGSNFVDQ    +   G V +E
Subjt:  GAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

A0A6J1FIC8 light-harvesting complex-like protein OHP2, chloroplastic

6.5e-54

70.31

Show/hide

Query:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA
        MSGACSIPF        +SSPA ASPS     SASS   H+S+RFSS KPF+ TIRSSQTEGP+RRPAAPSLREPSP       PPL     PSQ+PPS 
Subjt:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLM----PSQSPPSA

Query:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
           AY AK DNVITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ    +   G V +E
Subjt:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

A0A6J1HG91 light-harvesting complex-like protein OHP2, chloroplastic

1.6e-52

72.73

Show/hide

Query:  MSGACSIPF--------TSSPAAASPSPSA----SSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPP-PLMPSQSPPSAAAS-------
        MSGACS PF        +SS AA SPS SA    SS   H+S+RFSS+KPF+ TIRSSQT+GPIRRPAAPSLREPSPP P  P + PPS+A +       
Subjt:  MSGACSIPF--------TSSPAAASPSPSA----SSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPP-PLMPSQSPPSAAAS-------

Query:  -AYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
         AY AKQDN ITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
Subjt:  -AYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ

A0A6J1JS47 light-harvesting complex-like protein OHP2, chloroplastic

6.1e-52

72.16

Show/hide

Query:  MSGACSIPF--------TSSPAAASPSPSA----SSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPS----PPPLMPSQSPPSA-----AA
        MSGACS PF        +SS AA SPS SA    SS   H+S+RFSS+KPF+ TIRSSQT+GPIRRPAAPSLREPS    PPPL P+ +  +A     +A
Subjt:  MSGACSIPF--------TSSPAAASPSPSA----SSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPS----PPPLMPSQSPPSA-----AA

Query:  SAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
         AY AKQDN ITLE QRQKAKELQEYFK KKLDEADQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
Subjt:  SAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ

A0A6J1K1U3 light-harvesting complex-like protein OHP2, chloroplastic

2.5e-53

69.79

Show/hide

Query:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLMP----SQSPPSA
        MSGACSIPF        +SSPA ASPS     SASS   H+S+RFSS+KPF+ TIRSSQTEGP+RRPAAPSLREPSP       PPL P    SQ+PPS 
Subjt:  MSGACSIPF--------TSSPAAASPS----PSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSP-------PPLMP----SQSPPSA

Query:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE
           AY AK DNVITLE QRQKAKELQEYFK KKLDE DQGPFFGFI KNEISNGRWAMFGFAVGLLTEYATGSNFVDQ    +   G V +E
Subjt:  AASAYGAKQDNVITLELQRQKAKELQEYFKLKKLDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVE

SwissProt top hits

e value

%identity

Alignment

Q9FEC1 Light-harvesting complex-like protein OHP2, chloroplastic

1.0e-35

62.76

Show/hide

Query:  SPSPSASSPPPHTSLRFS-SAKPFLLTIRSSQTEGPIRRPAA-PSLREPSP--PPLMPSQSPPSA--AASAYGAKQDNVITLELQRQKAKELQEYFKLKK
        +PS S+SS    +S RFS + KP +  IR SQTEGP+RRP+A P+LREP    PP  PS SPP +     A      +V T+E QRQKAKELQEYFK KK
Subjt:  SPSPSASSPPPHTSLRFS-SAKPFLLTIRSSQTEGPIRRPAA-PSLREPSP--PPLMPSQSPPSA--AASAYGAKQDNVITLELQRQKAKELQEYFKLKK

Query:  LDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
        L+ A QGPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQ
Subjt:  LDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G34000.1 one-helix protein 2

7.1e-37

62.76

Show/hide

Query:  SPSPSASSPPPHTSLRFS-SAKPFLLTIRSSQTEGPIRRPAA-PSLREPSP--PPLMPSQSPPSA--AASAYGAKQDNVITLELQRQKAKELQEYFKLKK
        +PS S+SS    +S RFS + KP +  IR SQTEGP+RRP+A P+LREP    PP  PS SPP +     A      +V T+E QRQKAKELQEYFK KK
Subjt:  SPSPSASSPPPHTSLRFS-SAKPFLLTIRSSQTEGPIRRPAA-PSLREPSP--PPLMPSQSPPSA--AASAYGAKQDNVITLELQRQKAKELQEYFKLKK

Query:  LDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ
        L+ A QGPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQ
Subjt:  LDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGGGGGCCTGTTCGATCCCCTTCACCTCCTCGCCGGCCGCCGCTTCTCCGTCGCCGTCGGCTTCTTCACCGCCGCCTCACACCTCCCTCCGATTCTCTTCCGCCAA
GCCTTTCCTCCTCACCATTCGGAGCTCTCAGACCGAAGGCCCTATCCGCAGGCCGGCGGCTCCTTCTCTGAGGGAGCCTTCGCCGCCGCCTCTCATGCCGTCGCAATCGC
CTCCGTCCGCGGCGGCGTCGGCGTATGGTGCGAAACAGGATAATGTAATCACGTTGGAGCTTCAGAGGCAGAAGGCGAAGGAGCTTCAGGAGTATTTTAAGCTGAAGAAG
CTTGATGAAGCTGATCAGGGTCCCTTCTTTGGCTTCATCGCCAAGAATGAAATTTCCAATGGGAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTACTGACAGAGTATGC
AACTGGTTCAAACTTTGTTGATCAATTTTATTGTAAGGTGCAAGGAAGGGGTGGCGTAGTGGTTGAAGACTTAAGTTTTGAAGGTGTGCCCTTTTCAAGATCCTAG

mRNA sequence

Show/hide mRNA sequence

TTTACCCATGGTAATGTACTTTCGTGGATTGTATTGTTCCTGAAACTTGGGCAGATGGCAACCACACCAAACATATCCAAATCCTTCAATTCCCCAAAATCGGAATCCAT
TTCTTCTGAAGGAGAAATTTCAGAGGAAGAGAACTCAAATGTCGGGGGCCTGTTCGATCCCCTTCACCTCCTCGCCGGCCGCCGCTTCTCCGTCGCCGTCGGCTTCTTCA
CCGCCGCCTCACACCTCCCTCCGATTCTCTTCCGCCAAGCCTTTCCTCCTCACCATTCGGAGCTCTCAGACCGAAGGCCCTATCCGCAGGCCGGCGGCTCCTTCTCTGAG
GGAGCCTTCGCCGCCGCCTCTCATGCCGTCGCAATCGCCTCCGTCCGCGGCGGCGTCGGCGTATGGTGCGAAACAGGATAATGTAATCACGTTGGAGCTTCAGAGGCAGA
AGGCGAAGGAGCTTCAGGAGTATTTTAAGCTGAAGAAGCTTGATGAAGCTGATCAGGGTCCCTTCTTTGGCTTCATCGCCAAGAATGAAATTTCCAATGGGAGGTGGGCA
ATGTTTGGTTTTGCTGTTGGATTACTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAATTTTATTGTAAGGTGCAAGGAAGGGGTGGCGTAGTGGTTGAAGACTT
AAGTTTTGAAGGTGTGCCCTTTTCAAGATCCTAGGTTTGAGACTCGCCTATGATATTAGGTGCAAGAATAATCCCCAAAGGATGGCACAGTGGTTGAAGACTTGGGTTTT
GAGGGTATGTTTCCTTCAAGGTTCCAAGTTCGAAATTCAGGTGTGACATTACTCTTTCGATGTCTTCCAATGCTTAGACTAGGGACGTCTCTGGTTACCTTTGTTTCAAA
AATAAAAAAAAGTGCAAGAATAGGCCCTTTTAATTCTTTTTTATATATATACAAATTATCAAAGTTAGTTTATG

Protein sequence

Show/hide protein sequence

MSGACSIPFTSSPAAASPSPSASSPPPHTSLRFSSAKPFLLTIRSSQTEGPIRRPAAPSLREPSPPPLMPSQSPPSAAASAYGAKQDNVITLELQRQKAKELQEYFKLKK
LDEADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEYATGSNFVDQFYCKVQGRGGVVVEDLSFEGVPFSRS

Sed0018725 (gene) of Chayote v1 genome