; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0018726 (gene) of Chayote v1 genome

Gene IDSed0018726
OrganismSechium edule (Chayote v1)
DescriptionU1 small nuclear ribonucleoprotein A isoform X2
Genome locationLG10:4494107..4499350
RNA-Seq ExpressionSed0018726
SyntenySed0018726
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022133116.1 protein WHI4 [Momordica charantia]1.2e-14484.33Show/hide
Query:  MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESS
        MD+MA++YP PP AP    SGLEAP Y YYQ P      P SQHY    PPTFA+Y    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESS
Subjt:  MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESS

Query:  HLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTI
        HLR+PTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPD GLGSTHMSGM NSAY+TI
Subjt:  HLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTI

Query:  GYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPG
        GYPSAQSHGSFD K+VNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPPG
Subjt:  GYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPG

Query:  EGMRLEYAKSRMGMRRKSK
        EGMRLEYAKSRMGMR+K K
Subjt:  EGMRLEYAKSRMGMRRKSK

XP_022949757.1 protein WHI4 isoform X2 [Cucurbita moschata]1.9e-14584.06Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPDPGLGSTHMSGM NSAY+T
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT

Query:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP
        IGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Subjt:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP

Query:  GEGMRLEYAKSRMGMRRKSK
        GEGMRLEYAKSRMGMR+K K
Subjt:  GEGMRLEYAKSRMGMRRKSK

XP_022977593.1 protein WHI4 isoform X1 [Cucurbita maxima]1.6e-14483.75Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RTEDERYGSDKKA+VS F R TPDPGLGSTHMSGM NSAY+T
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT

Query:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP
        IGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Subjt:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP

Query:  GEGMRLEYAKSRMGMRRKSK
        GEGMRLEYAKSRMGMR+K K
Subjt:  GEGMRLEYAKSRMGMRRKSK

XP_023543723.1 protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo]1.1e-14584.06Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPDPGLGSTHMSGM NSAY+T
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT

Query:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP
        IGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQEL+QIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Subjt:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP

Query:  GEGMRLEYAKSRMGMRRKSK
        GEGMRLEYAKSRMGMR+K K
Subjt:  GEGMRLEYAKSRMGMRRKSK

XP_038881694.1 protein WHI4 isoform X2 [Benincasa hispida]1.5e-14585.17Show/hide
Query:  MDEMANYYPAP-PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHL
        MD+MA+YYP P PP   SGLE P Y +YQ P      P SQHY    PPTFASY    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHL
Subjt:  MDEMANYYPAP-PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHL

Query:  RTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGY
        RTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPDPGLGSTHMSGM NSAY+TIGY
Subjt:  RTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGY

Query:  PSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEG
        PSAQSHGSFD KTVNDTVAANV PQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDT CS+GA+NHLQG++LYSSPPGEG
Subjt:  PSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEG

Query:  MRLEYAKSRMGMRRKSK
        MRLEYAKSRMGMR+K K
Subjt:  MRLEYAKSRMGMRRKSK

TrEMBL top hitse value%identityAlignment
A0A6J1BU41 protein WHI46.0e-14584.33Show/hide
Query:  MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESS
        MD+MA++YP PP AP    SGLEAP Y YYQ P      P SQHY    PPTFA+Y    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESS
Subjt:  MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESS

Query:  HLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTI
        HLR+PTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPD GLGSTHMSGM NSAY+TI
Subjt:  HLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTI

Query:  GYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPG
        GYPSAQSHGSFD K+VNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPPG
Subjt:  GYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPG

Query:  EGMRLEYAKSRMGMRRKSK
        EGMRLEYAKSRMGMR+K K
Subjt:  EGMRLEYAKSRMGMRRKSK

A0A6J1GCW9 U1 small nuclear ribonucleoprotein A isoform X12.3e-14483.8Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDP-GLGSTHMSGMSNSAYD
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPDP GLGSTHMSGM NSAY+
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDP-GLGSTHMSGMSNSAYD

Query:  TIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP
        TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Subjt:  TIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP

Query:  PGEGMRLEYAKSRMGMRRKSK
        PGEGMRLEYAKSRMGMR+K K
Subjt:  PGEGMRLEYAKSRMGMRRKSK

A0A6J1GD02 protein WHI4 isoform X29.2e-14684.06Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPDPGLGSTHMSGM NSAY+T
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT

Query:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP
        IGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Subjt:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP

Query:  GEGMRLEYAKSRMGMRRKSK
        GEGMRLEYAKSRMGMR+K K
Subjt:  GEGMRLEYAKSRMGMRRKSK

A0A6J1IMS7 U1 small nuclear ribonucleoprotein A isoform X21.9e-14383.49Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDP-GLGSTHMSGMSNSAYD
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RTEDERYGSDKKA+VS F R TPDP GLGSTHMSGM NSAY+
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDP-GLGSTHMSGMSNSAYD

Query:  TIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP
        TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Subjt:  TIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP

Query:  PGEGMRLEYAKSRMGMRRKSK
        PGEGMRLEYAKSRMGMR+K K
Subjt:  PGEGMRLEYAKSRMGMRRKSK

A0A6J1IQG5 protein WHI4 isoform X17.8e-14583.75Show/hide
Query:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES
        MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY    LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYES
Subjt:  MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYES

Query:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT
        SHLR+PTQTTQPFAFAVFSDQQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RTEDERYGSDKKA+VS F R TPDPGLGSTHMSGM NSAY+T
Subjt:  SHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDT

Query:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP
        IGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Subjt:  IGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP

Query:  GEGMRLEYAKSRMGMRRKSK
        GEGMRLEYAKSRMGMR+K K
Subjt:  GEGMRLEYAKSRMGMRRKSK

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a2.8e-1443.33Show/hide
Query:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR
        +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +A+NG+ FD E    L ++ AKAN++  +++
Subjt:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR

Q6ZRY4 RNA-binding protein with multiple splicing 22.1e-1443.33Show/hide
Query:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR
        +VRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A  A +A+NG+ FD E    L ++ AKAN++  +++
Subjt:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR

Q8VC52 RNA-binding protein with multiple splicing 21.6e-1443.33Show/hide
Query:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR
        +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +A+NG+ FD E    L ++ AKAN++  +++
Subjt:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR

Q9W6I1 RNA-binding protein with multiple splicing 23.6e-1443.33Show/hide
Query:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR
        +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +A+NG+ FD E    L ++ AKAN++  +++
Subjt:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR

Q9YGP5 RNA-binding protein with multiple splicing 24.7e-1443.33Show/hide
Query:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR
        +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +A+NG+ FD E    L ++ AKAN++  + +
Subjt:  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-7953.99Show/hide
Query:  MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTT
        MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   
Subjt:  MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTT

Query:  QPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHG
        +PFAFAVFSD QSA+  MHA+NGMVFDLEK S L++DLAK+N +SKR+RT+D   G +   ++  +  +T + G GS    GMS+SAY+TIGY  AQS G
Subjt:  QPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHG

Query:  SFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR
              + +      T + P     PCPT+F+AN+GP+CTE ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Subjt:  SFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR

Query:  LEYAKSRMGMRRK
        L+YA+SRMGMR+K
Subjt:  LEYAKSRMGMRRK

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-7553.14Show/hide
Query:  MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTT
        MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   
Subjt:  MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTT

Query:  QPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHG
        +PFAFAVFSD QSA+  MHA+NGMVFDLEK S L++DLAK+N +SKR+RT+D   G +   ++  +  +T + G GS    GMS+SAY+TIGY  AQS G
Subjt:  QPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHG

Query:  SFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR
              + +      T + P     PCPT+F+AN+GP+CTE ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Subjt:  SFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR

Query:  LEY
        L+Y
Subjt:  LEY

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-7653.35Show/hide
Query:  MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTT
        MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   
Subjt:  MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTT

Query:  QPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHG
        +PFAFAVFSD QSA+  MHA+NGMVFDLEK S L++DLAK+N +SKR+RT+D   G +   ++  +  +T + G GS    GMS+SAY+TIGY  AQS G
Subjt:  QPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHG

Query:  SFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR
              + +      T + P     PCPT+F+AN+GP+CTE ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Subjt:  SFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR

Query:  LEYAKSRMGMRRK
        L+   SRMGMR+K
Subjt:  LEYAKSRMGMRRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.7e-3034.24Show/hide
Query:  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLR------------------TPTQTTQPFAFAVFSDQQSAI
        YQ      H PP     A    A    + TLF++GLP DVK REI+NLFR   G+ES  L+                   P       AFA F+  + A+
Subjt:  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLR------------------TPTQTTQPFAFAVFSDQQSAI

Query:  GAMHAVNGMVFDLEKQSVLYVDLAKANSRSK------------RTRTEDERYGSDKKARVSRFPRSTPDPG-LGSTHMSGMSNSAYDTIGYPSAQSHGSF
         AM+ +NG+ FD +  S L+++LA++NSR K                E  +   D+       P    +PG   S   +  + S  D+     A S    
Subjt:  GAMHAVNGMVFDLEKQSVLYVDLAKANSRSK------------RTRTEDERYGSDKKARVSRFPRSTPDPG-LGSTHMSGMSNSAYDTIGYPSAQSHGSF

Query:  DYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLE
          K       A        C T+F+ANLGP+CTE EL Q+ SR PGF  LK+++  G PVAFADF++   ++ A+NHLQG +L SS  G GM +E
Subjt:  DYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.5e-3637.1Show/hide
Query:  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSV
        YQ      H PP     A    A    + TLF++GLP DVK REI+NLFR   G+ES  L+   +  Q  AFA F+  + A+ AM+ +NG+ FD +  S 
Subjt:  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSV

Query:  LYVDLAKANSRSK------------RTRTEDERYGSDKKARVSRFPRSTPDPG-LGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP
        L+++LA++NSR K                E  +   D+       P    +PG   S   +  + S  D+     A S      K       A       
Subjt:  LYVDLAKANSRSK------------RTRTEDERYGSDKKARVSRFPRSTPDPG-LGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP

Query:  PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRM
         C T+F+ANLGP+CTE EL Q+ SR PGF  LK+++  G PVAFADF++   ++ A+NHLQG +L SS  G GM +EYA+S+M
Subjt:  PCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCC
TCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATC
TCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCA
ATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGAAGATGAAAG
ATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGA
TTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTG
GCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTT
TGCCGATTTTCAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTACGCAAAAT
CTCGAATGGGTATGCGTAGGAAATCGAAATGA
mRNA sequenceShow/hide mRNA sequence
CAGAGAACTGCTCTCCGATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCG
TCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCC
CCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGCCCTTTGCATTTGCTGTATTTTCGGACCAGC
AGTCTGCCATTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACG
AGGACAGAAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAA
TTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACGCCTCAAAATCCCCCTT
GTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTAT
GGGGCTCCAGTTGCTTTTGCCGATTTTCAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCG
ATTGGAGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGAATAATACAATACTTGCAGACATGACTGCAGCCAACATGGAAGAAAAGAGAGAGGCCCTCAG
GCCATGTTACCAGCCAGAGGATGTGCATTATTTGTATTGTTCTATCTAGATGAGCAAATTTGCAACATATGCCATGCCCATTTTATTTTTTCATTGTATCAAATCCTGGC
C
Protein sequenceShow/hide protein sequence
MDEMANYYPAPPPAPASGLEAPTYSYYQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGA
MHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFV
ANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRMGMRRKSK